CF836200

Overview
NameCF836200
Unique NameCF836200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BDEBA (Malate dehydrogenase OS=Bdellovibrio bacteriovorus GN=mdh PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.768e-25
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = -2
Query:  310 DAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 633
            DAW    FI  V +RG AII+AR           A DHIRDW  GT  G WV+MG+  DGSY +P G++Y FPVTC+NGE+ IV+GL ID FSR+K++ T +EL+EEK
Sbjct:  222 DAWNKDTFIPTVGKRGAAIIEARGLSSAASAASAAVDHIRDWWLGT-NGEWVTMGIPSDGSYDIPEGIMYGFPVTCKNGEYEIVKGLEIDAFSREKMNNTLKELNEEK 328          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_STRCO (Malate dehydrogenase OS=Streptomyces coelicolor GN=mdh PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.308e-25
Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            V D+ WL  EFI  V +RG AII+AR           A DH+  WV GT EG W SMG+  DGSY VP G+I SFPVT ++G + IVQGL I+EFSR ++D + +ELSEE+
Sbjct:  210 VNDEKWLADEFIPTVAKRGAAIIEARGASSAASAANAAIDHVYTWVNGTAEGDWTSMGIPSDGSYGVPEGIISSFPVTTKDGSYEIVQGLDINEFSRARIDASVKELSEER 320          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_NITEC (Malate dehydrogenase OS=Nitrosomonas eutropha (strain C91) GN=mdh PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.717e-25
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = -2
Query:  313 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 642
            +KD  W+   FI  VQ+RG  +I+AR             DH+R+W FGT +G W +MG+  DGSY++P G+IY FPV C+NG   IVQGL I+ FSR +LD    EL++E
Sbjct:  209 IKDPIWIENYFIPTVQKRGAVVIEARGLSSAASAANAIIDHLRNWFFGTADGDWTTMGILSDGSYEIPEGVIYGFPVICKNGMREIVQGLEINPFSRTRLDAAYNELTQE 318          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_CHRVO (Malate dehydrogenase OS=Chromobacterium violaceum GN=mdh PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.717e-25
Identity = 57/112 (50.89%), Postives = 71/112 (63.39%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            + DD W    F+  V +RG AII+AR           A DHIRDWV GT  G WV+MGV  DGSY +P G++Y  PV C NGE+  V+GL ID FSR+++DLT  EL EE+A
Sbjct:  209 INDDVWNRDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGT-NGKWVTMGVPSDGSYGIPEGVMYGVPVVCENGEYKRVEGLEIDAFSRERMDLTLAELEEERA 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_STRGG (Malate dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=mdh PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.772e-25
Identity = 56/111 (50.45%), Postives = 73/111 (65.77%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            V D+ WL   FI  V +RG AII+AR           A DH+  WV GT EG W SMG+  DGSY VP G+I SFPVT ++G++ IVQGL I+EFSR ++D + +EL+EE+
Sbjct:  210 VNDEVWLADTFIPTVAKRGAAIIEARGASSAASAANAAIDHVHTWVNGTAEGDWTSMGIPSDGSYGVPEGIISSFPVTTKDGKYEIVQGLDINEFSRTRIDASVKELTEER 320          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_PSYA2 (Malate dehydrogenase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.772e-25
Identity = 56/110 (50.91%), Postives = 69/110 (62.73%), Query Frame = -2
Query:  310 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDE-FSRKKLDLTAEELSEEK 636
            D  W  G +I  VQQRG AIIKAR           A  H+R WV GT E  WVSMGVY +G Y +  GLIYSFP TC NG+W+IV G+ +   FS++K+  T +ELSEE+
Sbjct:  212 DRTWYEGTYIPEVQQRGAAIIKARGASSAASAANAAIAHMRTWVLGTDENDWVSMGVYSNGEYGIAKGLIYSFPCTCTNGDWSIVDGVDVSSAFSKEKMAATEQELSEER 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_DEIRA (Malate dehydrogenase OS=Deinococcus radiodurans GN=mdh PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.772e-25
Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = -2
Query:  310 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            D  W   ++I  V +RG AII+AR           A DH+ DW  GT +G WVSMG+  DGSY +P GLIY FPV  ++G++ IVQGL + +FSR K+D TA+EL EE+
Sbjct:  212 DRTWYENDYIPTVAKRGAAIIEARGASSAASAASAAIDHMHDWALGTKDGEWVSMGIPSDGSYGIPEGLIYGFPVRVKDGKYEIVQGLDVSDFSRGKMDATAQELEEER 320          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_THETH (Malate dehydrogenase OS=Thermus thermophilus GN=mdh PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.146e-24
Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = -2
Query:  313 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 636
            D  W    FI  V QRG AII+AR           A +HIRDW  GTPEG WVSM V   G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  210 DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_THET8 (Malate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=mdh PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.146e-24
Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = -2
Query:  313 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 636
            D  W    FI  V QRG AII+AR           A +HIRDW  GTPEG WVSM V   G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  210 DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_THET2 (Malate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=mdh PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.146e-24
Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = -2
Query:  313 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 636
            D  W    FI  V QRG AII+AR           A +HIRDW  GTPEG WVSM V   G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  210 DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
The following BLAST results are available for this feature:
BLAST of CF836200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
MDH_BDEBA1.768e-2553.70Malate dehydrogenase OS=Bdellovibrio bacteriovorus... [more]
MDH_STRCO2.308e-2552.25Malate dehydrogenase OS=Streptomyces coelicolor GN... [more]
MDH_NITEC6.717e-2546.36Malate dehydrogenase OS=Nitrosomonas eutropha (str... [more]
MDH_CHRVO6.717e-2550.89Malate dehydrogenase OS=Chromobacterium violaceum ... [more]
MDH_STRGG8.772e-2550.45Malate dehydrogenase OS=Streptomyces griseus subsp... [more]
MDH_PSYA28.772e-2550.91Malate dehydrogenase OS=Psychrobacter arcticus (st... [more]
MDH_DEIRA8.772e-2548.62Malate dehydrogenase OS=Deinococcus radiodurans GN... [more]
MDH_THETH1.146e-2449.07Malate dehydrogenase OS=Thermus thermophilus GN=md... [more]
MDH_THET81.146e-2449.07Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_THET21.146e-2449.07Malate dehydrogenase OS=Thermus thermophilus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836200 ID=CF836200; Name=CF836200; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTCCAAAAAAAAAACAATAAAACTGTTATTGATAG
TTTGATACATAAATCACAAGGGGCATTTAATATCCATTTATCCAGGAAAA
GTAACAAAACTCCAAAATCCCGATATTCAAATGCAAAAATAGCAACATAA
AATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAACAATGG
TTTTATTCAAAACTGTAACTCTACCAACTACTCAAACAAAGCTAAGGGCC
TTGGTAACACCCTATTGAAGGGAAAAAAGCTTTTAAAAAAAACTTGAGTA
TGCGAGGGCCTTCTCCTCGGAAAGCTCCTCTGCTGTCAAGTCCAACTTCT
TCCTTGAAAATTCATCAATGCTGAGTCCTTGAACAATTGTCCATTCCCCG
TTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTACTTTGTA
TGAACCATCAAAGTATACCCCCATGGAAACCCAAGGGCCCTCAGGAGTTC
CAAAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGA
GCACTCGAAAGCTTTCTGGCTTTGATGATTGCACCACCACGTTGTTGGAC
TGGGGTTATGAATTCTCCATTCAACCATGCATCATCCTTGACA
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