CF836200

Overview
NameCF836200
Unique NameCF836200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig483 contig Csv1_Contig483:1..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_AKKM8 (Malate dehydrogenase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=mdh PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.354e-24
Identity = 59/112 (52.68%), Postives = 70/112 (62.50%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPV-TCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            +KD  WL G+FIT VQQRG AIIKAR           A D +R     TPEG W S+ V  DGSY +  GLI SFPV T ++G W IVQGL +D FSR+K+D T  EL EE+
Sbjct:  209 IKDTEWLKGDFITTVQQRGAAIIKARGASSAASAASAAVDTVRSLATQTPEGDWYSVAVCSDGSYGIEKGLICSFPVRTTKDGGWEIVQGLPVDAFSREKIDATVNELKEER 320          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURCJ (Malate dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.686e-24
Identity = 56/111 (50.45%), Postives = 69/111 (62.16%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DD W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  210 INDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURCH (Malate dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.686e-24
Identity = 56/111 (50.45%), Postives = 69/111 (62.16%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DD W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  210 INDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURCC (Malate dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.686e-24
Identity = 56/111 (50.45%), Postives = 69/111 (62.16%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DD W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  210 INDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURCA (Malate dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.686e-24
Identity = 56/111 (50.45%), Postives = 69/111 (62.16%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DD W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  210 INDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH2_BURVG (Malate dehydrogenase 2 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.686e-24
Identity = 57/111 (51.35%), Postives = 69/111 (62.16%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            V DD W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  210 VNDDVWNRETFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURXL (Malate dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=mdh PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.426e-24
Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + D+ W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T +EL EE+
Sbjct:  210 INDEEWNRNTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLQELLEER 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BORPE (Malate dehydrogenase OS=Bordetella pertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.426e-24
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DDAW    FI  V +RG AII+AR           A DH+RDWV G+  G WV+MG+  DGSY +P G+IY FPV   NGE+ +++ L ID FSR++LD T +EL EE+
Sbjct:  212 INDDAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEER 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BORPA (Malate dehydrogenase OS=Bordetella parapertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.426e-24
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DDAW    FI  V +RG AII+AR           A DH+RDWV G+  G WV+MG+  DGSY +P G+IY FPV   NGE+ +++ L ID FSR++LD T +EL EE+
Sbjct:  212 INDDAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEER 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BORBR (Malate dehydrogenase OS=Bordetella bronchiseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.426e-24
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DDAW    FI  V +RG AII+AR           A DH+RDWV G+  G WV+MG+  DGSY +P G+IY FPV   NGE+ +++ L ID FSR++LD T +EL EE+
Sbjct:  212 INDDAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEER 321          
The following BLAST results are available for this feature:
BLAST of CF836200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
MDH_AKKM84.354e-2452.68Malate dehydrogenase OS=Akkermansia muciniphila (s... [more]
MDH_BURCJ5.686e-2450.45Malate dehydrogenase OS=Burkholderia cepacia (stra... [more]
MDH_BURCH5.686e-2450.45Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_BURCC5.686e-2450.45Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_BURCA5.686e-2450.45Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH2_BURVG5.686e-2451.35Malate dehydrogenase 2 OS=Burkholderia vietnamiens... [more]
MDH_BURXL7.426e-2449.55Malate dehydrogenase OS=Burkholderia xenovorans (s... [more]
MDH_BORPE7.426e-2448.65Malate dehydrogenase OS=Bordetella pertussis GN=md... [more]
MDH_BORPA7.426e-2448.65Malate dehydrogenase OS=Bordetella parapertussis G... [more]
MDH_BORBR7.426e-2448.65Malate dehydrogenase OS=Bordetella bronchiseptica ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02J08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836200 ID=CF836200; Name=CF836200; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTCCAAAAAAAAAACAATAAAACTGTTATTGATAG
TTTGATACATAAATCACAAGGGGCATTTAATATCCATTTATCCAGGAAAA
GTAACAAAACTCCAAAATCCCGATATTCAAATGCAAAAATAGCAACATAA
AATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAACAATGG
TTTTATTCAAAACTGTAACTCTACCAACTACTCAAACAAAGCTAAGGGCC
TTGGTAACACCCTATTGAAGGGAAAAAAGCTTTTAAAAAAAACTTGAGTA
TGCGAGGGCCTTCTCCTCGGAAAGCTCCTCTGCTGTCAAGTCCAACTTCT
TCCTTGAAAATTCATCAATGCTGAGTCCTTGAACAATTGTCCATTCCCCG
TTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTACTTTGTA
TGAACCATCAAAGTATACCCCCATGGAAACCCAAGGGCCCTCAGGAGTTC
CAAAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGA
GCACTCGAAAGCTTTCTGGCTTTGATGATTGCACCACCACGTTGTTGGAC
TGGGGTTATGAATTCTCCATTCAACCATGCATCATCCTTGACA
back to top