CF836200

Overview
NameCF836200
Unique NameCF836200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig483 contig Csv1_Contig483:1..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_AQUAR (Malate dehydrogenase OS=Aquaspirillum arcticum GN=mdh PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.267e-23
Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DDAW    F+  V +RG AII AR           A DHI DWV GT  G W +MG+  DGSY +P G+I+ FPVT  NGE+ IVQGLSID FS++++++T  EL EE+
Sbjct:  212 INDDAWNRDTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTA-GKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLEEQ 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_NITMU (Malate dehydrogenase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=mdh PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.654e-23
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            V D AW+   FI  +Q+RG  +I+AR           A  H+RDWV GTPEG WVSMG+  DGSY +P G+IY +PVTC+ GE+ IV  L I EFSR K+  +  EL  E+
Sbjct:  209 VNDMAWIETGFIPVIQKRGMEVIEARGSSSAASAANAAICHMRDWVSGTPEGDWVSMGIPSDGSYGIPEGVIYGYPVTCQGGEYKIVPDLEISEFSRMKMQASYRELMGER 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_RHOOB (Malate dehydrogenase OS=Rhodococcus opacus (strain B4) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.161e-23
Identity = 51/109 (46.79%), Postives = 67/109 (61.47%), Query Frame = -2
Query:  310 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            D  WL G+FI  V  RG AII+AR           A DH+ DWV GTPEG W S+ +   G+Y VP GL+ SFPV   +G W +V+GL ID+FSRK++D +  +L  E+
Sbjct:  214 DREWLTGDFIPTVANRGSAIIEARGTSSAASAANAAIDHVHDWVLGTPEGDWTSVALPSTGAYGVPEGLVSSFPVRSVDGAWQVVEGLEIDDFSRKRIDASVADLESER 322          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURCM (Malate dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.161e-23
Identity = 55/111 (49.55%), Postives = 68/111 (61.26%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DD W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  210 INDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVVCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_XANCP (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23
Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            + D  W  G FI  V +RG AII+AR           A DH+RDWV G+  G WV+MGV  DGSY +P G+I+ FPVT  NG++T+V+ L ID+FS+K +D T  EL EE++
Sbjct:  211 INDQEWNAGTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGIPEGVIFGFPVTTENGQYTLVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_XANCB (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23
Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            + D  W  G FI  V +RG AII+AR           A DH+RDWV G+  G WV+MGV  DGSY +P G+I+ FPVT  NG++T+V+ L ID+FS+K +D T  EL EE++
Sbjct:  211 INDQEWNAGTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGIPEGVIFGFPVTTENGQYTLVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_XANC8 (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23
Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            + D  W  G FI  V +RG AII+AR           A DH+RDWV G+  G WV+MGV  DGSY +P G+I+ FPVT  NG++T+V+ L ID+FS+K +D T  EL EE++
Sbjct:  211 INDQEWNAGTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGIPEGVIFGFPVTTENGQYTLVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_POLSQ (Malate dehydrogenase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            + D AW    FI  V +RG AII+AR           A DHI DWV GT  G WV+MG+   G Y +PA +IY FPVTC NGE+ +++GL IDEFSR+++  T  EL EE+A
Sbjct:  212 INDAAWNKDVFIPTVGKRGAAIIEARGLSSAASAANAAIDHIHDWVLGT-NGKWVTMGIPSKGEYGIPAEVIYGFPVTCENGEYKMIEGLEIDEFSRERMTHTLNELLEEQA 322          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_HERAR (Malate dehydrogenase OS=Herminiimonas arsenicoxydans GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23
Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + D+ W    F+  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P   ++ FPVT  NGE+ IVQGL ID FS+++++LT +ELSEE+
Sbjct:  212 INDEVWNKDVFLPTVGKRGAAIIEARGVSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPKDTMFGFPVTTENGEYKIVQGLEIDAFSQERINLTLKELSEER 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURS3 (Malate dehydrogenase OS=Burkholderia sp. (strain 383) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23
Identity = 54/111 (48.65%), Postives = 68/111 (61.26%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DD W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  ++GL ID FSR+K+D T  EL EE+
Sbjct:  210 INDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVVCENGEYKRIEGLEIDAFSREKMDGTLAELLEER 319          
The following BLAST results are available for this feature:
BLAST of CF836200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
MDH_AQUAR1.267e-2349.55Malate dehydrogenase OS=Aquaspirillum arcticum GN=... [more]
MDH_NITMU1.654e-2348.65Malate dehydrogenase OS=Nitrosospira multiformis (... [more]
MDH_RHOOB2.161e-2346.79Malate dehydrogenase OS=Rhodococcus opacus (strain... [more]
MDH_BURCM2.161e-2349.55Malate dehydrogenase OS=Burkholderia ambifaria (st... [more]
MDH_XANCP2.822e-2348.21Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_XANCB2.822e-2348.21Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_XANC82.822e-2348.21Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]
MDH_POLSQ2.822e-2349.11Malate dehydrogenase OS=Polynucleobacter sp. (stra... [more]
MDH_HERAR2.822e-2347.75Malate dehydrogenase OS=Herminiimonas arsenicoxyda... [more]
MDH_BURS32.822e-2348.65Malate dehydrogenase OS=Burkholderia sp. (strain 3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836200 ID=CF836200; Name=CF836200; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTCCAAAAAAAAAACAATAAAACTGTTATTGATAG
TTTGATACATAAATCACAAGGGGCATTTAATATCCATTTATCCAGGAAAA
GTAACAAAACTCCAAAATCCCGATATTCAAATGCAAAAATAGCAACATAA
AATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAACAATGG
TTTTATTCAAAACTGTAACTCTACCAACTACTCAAACAAAGCTAAGGGCC
TTGGTAACACCCTATTGAAGGGAAAAAAGCTTTTAAAAAAAACTTGAGTA
TGCGAGGGCCTTCTCCTCGGAAAGCTCCTCTGCTGTCAAGTCCAACTTCT
TCCTTGAAAATTCATCAATGCTGAGTCCTTGAACAATTGTCCATTCCCCG
TTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTACTTTGTA
TGAACCATCAAAGTATACCCCCATGGAAACCCAAGGGCCCTCAGGAGTTC
CAAAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGA
GCACTCGAAAGCTTTCTGGCTTTGATGATTGCACCACCACGTTGTTGGAC
TGGGGTTATGAATTCTCCATTCAACCATGCATCATCCTTGACA
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