CF836200
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_AQUAR (Malate dehydrogenase OS=Aquaspirillum arcticum GN=mdh PE=1 SV=3) HSP 1 Score: 109.768 bits (273), Expect = 1.267e-23 Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = -2 Query: 310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642 + DDAW F+ V +RG AII AR A DHI DWV GT G W +MG+ DGSY +P G+I+ FPVT NGE+ IVQGLSID FS++++++T EL EE+ Sbjct: 212 INDDAWNRDTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTA-GKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLEEQ 321
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_NITMU (Malate dehydrogenase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=mdh PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.654e-23 Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = -2 Query: 310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642 V D AW+ FI +Q+RG +I+AR A H+RDWV GTPEG WVSMG+ DGSY +P G+IY +PVTC+ GE+ IV L I EFSR K+ + EL E+ Sbjct: 209 VNDMAWIETGFIPVIQKRGMEVIEARGSSSAASAANAAICHMRDWVSGTPEGDWVSMGIPSDGSYGIPEGVIYGYPVTCQGGEYKIVPDLEISEFSRMKMQASYRELMGER 319
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_RHOOB (Malate dehydrogenase OS=Rhodococcus opacus (strain B4) GN=mdh PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.161e-23 Identity = 51/109 (46.79%), Postives = 67/109 (61.47%), Query Frame = -2 Query: 310 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636 D WL G+FI V RG AII+AR A DH+ DWV GTPEG W S+ + G+Y VP GL+ SFPV +G W +V+GL ID+FSRK++D + +L E+ Sbjct: 214 DREWLTGDFIPTVANRGSAIIEARGTSSAASAANAAIDHVHDWVLGTPEGDWTSVALPSTGAYGVPEGLVSSFPVRSVDGAWQVVEGLEIDDFSRKRIDASVADLESER 322
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURCM (Malate dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=mdh PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.161e-23 Identity = 55/111 (49.55%), Postives = 68/111 (61.26%), Query Frame = -2 Query: 310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642 + DD W FI V +RG AII+AR A DH+RDWV GT G WV+MG+ DGSY +P +IY PV C NGE+ V+GL ID FSR+K+D T EL EE+ Sbjct: 210 INDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVVCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_XANCP (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris GN=mdh PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23 Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = -2 Query: 307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642 + D W G FI V +RG AII+AR A DH+RDWV G+ G WV+MGV DGSY +P G+I+ FPVT NG++T+V+ L ID+FS+K +D T EL EE++ Sbjct: 211 INDQEWNAGTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGIPEGVIFGFPVTTENGQYTLVKDLPIDDFSQKYIDKTLAELEEERS 321
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_XANCB (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=mdh PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23 Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = -2 Query: 307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642 + D W G FI V +RG AII+AR A DH+RDWV G+ G WV+MGV DGSY +P G+I+ FPVT NG++T+V+ L ID+FS+K +D T EL EE++ Sbjct: 211 INDQEWNAGTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGIPEGVIFGFPVTTENGQYTLVKDLPIDDFSQKYIDKTLAELEEERS 321
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_XANC8 (Malate dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=mdh PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23 Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = -2 Query: 307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642 + D W G FI V +RG AII+AR A DH+RDWV G+ G WV+MGV DGSY +P G+I+ FPVT NG++T+V+ L ID+FS+K +D T EL EE++ Sbjct: 211 INDQEWNAGTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGVPSDGSYGIPEGVIFGFPVTTENGQYTLVKDLPIDDFSQKYIDKTLAELEEERS 321
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_POLSQ (Malate dehydrogenase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=mdh PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23 Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = -2 Query: 307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642 + D AW FI V +RG AII+AR A DHI DWV GT G WV+MG+ G Y +PA +IY FPVTC NGE+ +++GL IDEFSR+++ T EL EE+A Sbjct: 212 INDAAWNKDVFIPTVGKRGAAIIEARGLSSAASAANAAIDHIHDWVLGT-NGKWVTMGIPSKGEYGIPAEVIYGFPVTCENGEYKMIEGLEIDEFSRERMTHTLNELLEEQA 322
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_HERAR (Malate dehydrogenase OS=Herminiimonas arsenicoxydans GN=mdh PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23 Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = -2 Query: 310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642 + D+ W F+ V +RG AII+AR A DH+RDWV GT G WV+MG+ DGSY +P ++ FPVT NGE+ IVQGL ID FS+++++LT +ELSEE+ Sbjct: 212 INDEVWNKDVFLPTVGKRGAAIIEARGVSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPKDTMFGFPVTTENGEYKIVQGLEIDAFSQERINLTLKELSEER 321
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURS3 (Malate dehydrogenase OS=Burkholderia sp. (strain 383) GN=mdh PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23 Identity = 54/111 (48.65%), Postives = 68/111 (61.26%), Query Frame = -2 Query: 310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642 + DD W FI V +RG AII+AR A DH+RDWV GT G WV+MG+ DGSY +P +IY PV C NGE+ ++GL ID FSR+K+D T EL EE+ Sbjct: 210 INDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVVCENGEYKRIEGLEIDAFSREKMDGTLAELLEER 319 The following BLAST results are available for this feature:
BLAST of CF836200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 173
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836200 ID=CF836200; Name=CF836200; organism=Citrus sinensis; type=EST; length=643bpback to top |