CF836200

Overview
NameCF836200
Unique NameCF836200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig483 contig Csv1_Contig483:1..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURPS (Malate dehydrogenase OS=Burkholderia pseudomallei GN=mdh PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23
Identity = 55/111 (49.55%), Postives = 68/111 (61.26%), Query Frame = -2 
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DD W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  210 INDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURP6 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 668) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23
Identity = 55/111 (49.55%), Postives = 68/111 (61.26%), Query Frame = -2 
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DD W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  210 INDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURP1 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=mdh PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23
Identity = 55/111 (49.55%), Postives = 68/111 (61.26%), Query Frame = -2 
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DD W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  210 INDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURP0 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1106a) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23
Identity = 55/111 (49.55%), Postives = 68/111 (61.26%), Query Frame = -2 
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DD W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  210 INDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURMS (Malate dehydrogenase OS=Burkholderia mallei (strain SAVP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23
Identity = 55/111 (49.55%), Postives = 68/111 (61.26%), Query Frame = -2 
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DD W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  210 INDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURMA (Malate dehydrogenase OS=Burkholderia mallei GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23
Identity = 55/111 (49.55%), Postives = 68/111 (61.26%), Query Frame = -2 
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DD W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  210 INDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURM9 (Malate dehydrogenase OS=Burkholderia mallei (strain NCTC 10229) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23
Identity = 55/111 (49.55%), Postives = 68/111 (61.26%), Query Frame = -2 
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DD W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  210 INDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURM7 (Malate dehydrogenase OS=Burkholderia mallei (strain NCTC 10247) GN=mdh PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.822e-23
Identity = 55/111 (49.55%), Postives = 68/111 (61.26%), Query Frame = -2 
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DD W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  210 INDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_SYNFM (Malate dehydrogenase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=mdh PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.686e-23
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = -2 
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            V D+AW   E+I  V +RG AII+AR           A DH+ DW  GT  G WV+MG+  DGSY +P G +Y  PVTC  G++  V+GL ID FSR+K+D T +EL+EE+A
Sbjct:  212 VNDEAWYRNEYIPKVGKRGAAIIEARGLSSAASAANAAIDHMHDWALGT-NGKWVTMGLPSDGSYGIPEGTMYGVPVTCTPGKYERVKGLEIDAFSREKMDFTLKELTEEQA 322
[Close]
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_XANC5 (Malate dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=mdh PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.287e-23
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = -2 
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            + D  W    FI  V +RG AII+AR           A DHIRDWV GT  G WV+MGV  DGSY +P G+++ FPVT  NG++TIV+ L ID+FS+K +D T  EL EE++
Sbjct:  211 INDQEWNASTFIPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGT-NGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGKYTIVKDLPIDDFSQKYIDKTLAELEEERS 321
The following BLAST results are available for this feature:
BLAST of CF836200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
MDH_BURPS2.822e-2349.55Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP62.822e-2349.55Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP12.822e-2349.55Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP02.822e-2349.55Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURMS2.822e-2349.55Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURMA2.822e-2349.55Malate dehydrogenase OS=Burkholderia mallei GN=mdh... [more]
MDH_BURM92.822e-2349.55Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURM72.822e-2349.55Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_SYNFM3.686e-2348.21Malate dehydrogenase OS=Syntrophobacter fumaroxida... [more]
MDH_XANC56.287e-2349.11Malate dehydrogenase OS=Xanthomonas campestris pv.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836200 ID=CF836200; Name=CF836200; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTCCAAAAAAAAAACAATAAAACTGTTATTGATAG
TTTGATACATAAATCACAAGGGGCATTTAATATCCATTTATCCAGGAAAA
GTAACAAAACTCCAAAATCCCGATATTCAAATGCAAAAATAGCAACATAA
AATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAACAATGG
TTTTATTCAAAACTGTAACTCTACCAACTACTCAAACAAAGCTAAGGGCC
TTGGTAACACCCTATTGAAGGGAAAAAAGCTTTTAAAAAAAACTTGAGTA
TGCGAGGGCCTTCTCCTCGGAAAGCTCCTCTGCTGTCAAGTCCAACTTCT
TCCTTGAAAATTCATCAATGCTGAGTCCTTGAACAATTGTCCATTCCCCG
TTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTACTTTGTA
TGAACCATCAAAGTATACCCCCATGGAAACCCAAGGGCCCTCAGGAGTTC
CAAAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGA
GCACTCGAAAGCTTTCTGGCTTTGATGATTGCACCACCACGTTGTTGGAC
TGGGGTTATGAATTCTCCATTCAACCATGCATCATCCTTGACA
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