CF838790

Overview
NameCF838790
Unique NameCF838790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: PPIA_SAGOE (Peptidyl-prolyl cis-trans isomerase A OS=Saguinus oedipus GN=PPIA PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 7.165e-16
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            FF+CT KTEWL GKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  112 FFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: PPIA_RAT (Peptidyl-prolyl cis-trans isomerase A OS=Rattus norvegicus GN=Ppia PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 7.165e-16
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            FF+CTAKTEWL GKHVVFG+V EGM +V+A+E+ GS +G+T+K + I+DCGQL
Sbjct:  112 FFICTAKTEWLDGKHVVFGKVKEGMSIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: PPIA_AOTTR (Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 7.165e-16
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            FF+CT KTEWL GKHVVFG+V EGM++V+A+E+ GS +G+T+K + IADCGQL
Sbjct:  112 FFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.165e-16
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            FF+CT KTEWL GKHVVFG+VVEG+DVVKA+E  GS SG+  K  +IADCGQL
Sbjct:  119 FFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 2.085e-15
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            FF+CTAKTEWL GKHVVFG+V EGM +V+A+E  GS +G+T+K + IA+CGQL
Sbjct:  112 FFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENGKTSKKITIANCGQL 164          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.723e-15
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            FF+CT KT WL GKHVVFG+V+EGMDVVKAIE  GS  G  + P VIADCG++
Sbjct:  119 FFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGEM 171          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.644e-15
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            FF+CTA T WL GKHVVFG V +G+D++K +E  GS SG+T+K + IADCGQL
Sbjct:  112 FFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQL 164          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.644e-15
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            FF+ TAKT WL  +HVVFG VVEGMDVVK +E +GS SG+TNK + + DCGQ+
Sbjct:  112 FFITTAKTSWLDNRHVVFGSVVEGMDVVKKLESLGSQSGKTNKKIAVVDCGQI 164          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.922e-15
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            FF+CT KT WL GKHVVFGQVV GM+VV+ +E+ GS+SG+ +K VVI DCG+L
Sbjct:  263 FFICTEKTTWLDGKHVVFGQVVSGMNVVREMERCGSASGKPSKRVVIVDCGEL 315          
BLAST of CF838790 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 5.135e-14
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 3
Query:    9 FFVCTAKTEWLFGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 167
            FF+CT K +WL GKHVVFG+VV+G +VVK +E VGS SG+  +PV+I+ CG+L
Sbjct:  220 FFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 272          
The following BLAST results are available for this feature:
BLAST of CF838790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PPIA_SAGOE7.165e-1666.04Peptidyl-prolyl cis-trans isomerase A OS=Saguinus ... [more]
PPIA_RAT7.165e-1666.04Peptidyl-prolyl cis-trans isomerase A OS=Rattus no... [more]
PPIA_AOTTR7.165e-1666.04Peptidyl-prolyl cis-trans isomerase A OS=Aotus tri... [more]
CYP3_CAEEL7.165e-1671.70Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab... [more]
PPIA_RABIT2.085e-1566.04Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
CYP2_CAEEL2.723e-1567.92Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
PPIA_HEMPU4.644e-1562.26Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
PPIA_BLAGE4.644e-1564.15Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]
PPIE_RHIOR7.922e-1566.04Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]
PPIE_SCHMA5.135e-1460.38Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06J20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838790 ID=CF838790; Name=CF838790; organism=Citrus sinensis; type=EST; length=450bp
CTGTATAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCTTTGGGAAG
CACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCAT
CGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCG
CTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAATGATCGCCATCA
TCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATGTTATCTATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAATTTTCCTGCTAT
GTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGTTCTTGATGAACT
GTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAAGATAGGGCTTGT
CTTGTTATATTACATATCCTTTTTTATGTTTTTTAAAAAAAAAAAAAAAA
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