CF931497

Overview
NameCF931497
Unique NameCF931497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF931497_ssr42 microsatellite CF931497_ssr42:42..51. BLAST: Citrus ESTs to Prunus persica proteins V1
CF931497_ssr109 microsatellite CF931497_ssr109:109..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4756 contig Csv1_Contig4756:44..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NHP2_BOVIN (H/ACA ribonucleoprotein complex subunit 2 OS=Bos taurus GN=NHP2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.179e-25
Identity = 51/113 (45.13%), Postives = 82/113 (72.57%), Query Frame = 3
Query:   87 ERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLV 425
            ERT H+     +V+L PIA+PLA ++L+++  K +++A + K ++RGVKEV K I +G KG+ V+AG+  PI+V  H+P++CE+ ++PY+Y+ SK DL  A  +KRPTC ++V
Sbjct:   21 ERTYHE----LLVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFINKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV 129          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NHP2_PONAB (H/ACA ribonucleoprotein complex subunit 2 OS=Pongo abelii GN=NHP2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.968e-24
Identity = 55/151 (36.42%), Postives = 98/151 (64.90%), Query Frame = 3
Query:   69 GSDSEAER-TPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 518
            G +++AE  +  +  ++ +V+  PIA+PLA ++L+++  K +++A + K ++RGVKEV K + +G KG+ V+AG+  PI+V  H+P++CE+ ++PY+Y+ SK DL  A  +KRPTC ++V  KP          D+ +  Y   +E+V+ L
Sbjct:   10 GPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV--KP---------HDEYQEAYDECLEEVQSL 149          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NHP2_HUMAN (H/ACA ribonucleoprotein complex subunit 2 OS=Homo sapiens GN=NHP2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.357e-24
Identity = 48/120 (40.00%), Postives = 86/120 (71.67%), Query Frame = 3
Query:   69 GSDSEAER-TPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLV 425
            G +++AE  +  +  ++ +V+  PIA+PLA ++L+++  K +++A + K ++RGVKEV K + +G KG+ V+AG+  PI+V  H+P++CE+ ++PY+Y+ SK DL  A  +KRPTC ++V
Sbjct:   10 GPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV 129          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NHP2_DROYA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Drosophila yakuba GN=NHP2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.847e-23
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3
Query:  117 KIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKC-LKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKA 482
            K++ +  IAKP+AGKKL+K+  KLV++A +HK  L+ G+K+V   +R+G  G+C+ AG+++P+D++ H+P +CEE  +PY Y  S+ DL  A   KR T  +LV       +L  E +++L A
Sbjct:   33 KLIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYAYTPSRADLGAAMGVKRGTVALLVRQNDEYKDLYDEVKEELSA 155          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NHP2_DROME (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Drosophila melanogaster GN=NHP2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.847e-23
Identity = 50/123 (40.65%), Postives = 81/123 (65.85%), Query Frame = 3
Query:  117 KIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKC-LKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKA 482
            K++ +  IAKP+AGKKL+K+  KLV++A +HK  L+ G+K+V   +R+G  G+C+ AG+++P+D++ H+P +CEE  +PY Y  S+ DL  A   KR T  +LV       +L  E +++L A
Sbjct:   33 KLIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNEEYKDLYDEVKEELSA 155          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NH2L1_CAEEL (NHP2-like protein 1 homolog OS=Caenorhabditis elegans GN=M28.5 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.510e-16
Identity = 44/128 (34.38%), Postives = 72/128 (56.25%), Query Frame = 3
Query:  135 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 518
            P A PLA   LS++ + LV++A  +K LK+G  E  K++ RG   + V+A +  P++++ H+P+LCE+ +VPY++V SK  L  A    RP              + Q E  +LK+    + EDV++L
Sbjct:    8 PKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIA---------ASITQNEGSQLKSQIQKIKEDVEKL 126          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: SNU13_SCHPO (13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe GN=snu13 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.576e-16
Identity = 43/125 (34.40%), Postives = 71/125 (56.80%), Query Frame = 3
Query:  123 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 497
            +S+ P A PLA   L+++ L LV++A+ +K L++G  E  K++ RG     V+A +  PI+++ H+P+LCE+ +VPY++V SK  L  A    RP     + T      L Q +  KL  +  L+
Sbjct:    1 MSVNPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIEKLLI 125          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: SNU13_USTMA (13 kDa ribonucleoprotein-associated protein OS=Ustilago maydis GN=SNU13 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.739e-16
Identity = 42/121 (34.71%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  135 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 497
            P A PLA   L+ + L L+++A+ +K LK+G  E  K++ RG     V+A ++ PI+++ H+P+LCE+ +VPY++V SK  L  A    RP     V T   +    Q +  KL  +  L+
Sbjct:    6 PKAFPLADATLTNQILDLIQQASHYKQLKKGANEATKTLNRGICEFIVMAADVEPIEIVLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVVSASVTTNEARELQSQIQTVKLAIERLLI 126          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NH2L1_XENTR (NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.739e-16
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  135 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTK 434
            P A PLA  +L+K  L LV++AA +K L++G  E  K++ RG     V+A +  P+++I H+P+LCE+ +VPY++V SK+ L  A    RP     V  K
Sbjct:    8 PKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIK 107          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NH2L1_DROME (NHP2-like protein 1 homolog OS=Drosophila melanogaster GN=hoip PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.739e-16
Identity = 41/128 (32.03%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  135 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 518
            P A PLA  +L+ + + L+++A  +  L++G  E  K++ RG   + V+AG+  PI+++ H+P+LCE+ +VPY++V SK+ L  A    RP     V T          E  +LK+  T + ++++ L
Sbjct:    7 PKAFPLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIVACSVTT---------NEGSQLKSQITSIQQEIERL 125          
The following BLAST results are available for this feature:
BLAST of CF931497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
NHP2_BOVIN5.179e-2545.13H/ACA ribonucleoprotein complex subunit 2 OS=Bos t... [more]
NHP2_PONAB1.968e-2436.42H/ACA ribonucleoprotein complex subunit 2 OS=Pongo... [more]
NHP2_HUMAN3.357e-2440.00H/ACA ribonucleoprotein complex subunit 2 OS=Homo ... [more]
NHP2_DROYA4.847e-2340.65H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_DROME4.847e-2340.65H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NH2L1_CAEEL1.510e-1634.38NHP2-like protein 1 homolog OS=Caenorhabditis eleg... [more]
SNU13_SCHPO2.576e-1634.4013 kDa ribonucleoprotein-associated protein OS=Sch... [more]
SNU13_USTMA5.739e-1634.7113 kDa ribonucleoprotein-associated protein OS=Ust... [more]
NH2L1_XENTR5.739e-1640.00NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l... [more]
NH2L1_DROME5.739e-1632.03NHP2-like protein 1 homolog OS=Drosophila melanoga... [more]

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Properties
Property NameValue
Genbank descriptionEST0568 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB259 similar to nhp2-like protein (acc# NP_196435), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF931497 ID=CF931497; Name=CF931497; organism=Citrus sinensis; type=EST; length=568bp
CTGAAAAAGAAAAACCCTAGCTCTGTTTCGTGCAATTCATTGAGAGAGAG
AACTGAAAGAAGAAAATGGGAAGCGACAGCGAAGCAGAGAGAACCCCACA
TAAAGATGAGAAGAAGAAGATTGTTAGTCTTGCTCCCATTGCTAAACCTC
TAGCTGGCAAGAAGCTCTCCAAAAGAACCCTCAAGCTTGTCCGTCGAGCT
GCTGAACACAAATGCTTGAAGAGAGGAGTGAAGGAAGTGGTCAAAAGTAT
CCGCCGTGGTCATAAAGGATTATGTGTTATAGCTGGGAACATTAGTCCAA
TTGACGTCATCACTCACGTTCCTATCTTATGTGAAGAGTCTGATGTTCCC
TACATTTATGTTGCTTCAAAAGAGGATCTTGCAAATGCAGGTGCCACAAA
GAGGCCAACATGCTGTGTTTTGGTGCTAACTAAGCCAACTAAGGGAGAAC
TAGGACAAGAGGAACAAGATAAGTTGAAAGCTGATTATACCCTCGTTGTA
GAGGATGTGAAGGAACTGGCATCCTCTCTTTTCTGATGAACTAGACTTAA
AGCCAACAAAGATGATTG
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