CF931497

Overview
NameCF931497
Unique NameCF931497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF931497_ssr42 microsatellite CF931497_ssr42:42..51. BLAST: Citrus ESTs to Prunus persica proteins V1
CF931497_ssr109 microsatellite CF931497_ssr109:109..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4756 contig Csv1_Contig4756:44..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: SNU13_YARLI (13 kDa ribonucleoprotein-associated protein OS=Yarrowia lipolytica GN=SNU13 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.197e-13
Identity = 41/121 (33.88%), Postives = 65/121 (53.72%), Query Frame = 3
Query:  135 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 497
            P A PLA   L+++ L +V++A   + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ +VPYI+V SK  L  A    RP     V +        Q  Q K K +  L+
Sbjct:    6 PKAFPLADAALTQQILDIVQQATHLRQLKKGANEATKTLNRGISEFIIMAADAEPIEILLHLPLLCEDKNVPYIFVPSKVALGRACGVSRPVISASVTSNDASQLKDQIIQMKDKIERLLI 126          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_NANEQ (50S ribosomal protein L7Ae OS=Nanoarchaeum equitans GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.197e-13
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 3
Query:  135 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANA 389
            P  K    ++L+ +  +LVR+A E   +++G  E  K++ RG   L +IA N++P +++ H+P LCEE  VPY+YV SKE+L  A
Sbjct:    6 PYVKFEVPEELANKVYELVRKARETGKIRKGTNETTKAVERGQAKLVIIAENVNPPEIVMHLPALCEEKGVPYVYVPSKEELGKA 90          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: NH2L1_DICDI (NHP2-like protein 1 homolog OS=Dictyostelium discoideum GN=DDB_G0282243 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.197e-13
Identity = 40/128 (31.25%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  141 AKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRP--TCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 518
            AKPLA  KL+   L L++++     LK+G  E  K++ R      V+A +  P++++ H+P+LCE+ ++PY++V+SK +L  A    RP   C V V           +++ +LK+  T V + +  L
Sbjct:   10 AKPLADSKLTLTILDLIQQSNNLGQLKKGANECTKAVSRSTAEFVVLAADAEPLEILLHIPLLCEDKNIPYVFVSSKSELGRACDVSRPVVACAVTV-----------DDKSQLKSQITNVKDSLDRL 126          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: SNU13_DEBHA (13 kDa ribonucleoprotein-associated protein OS=Debaryomyces hansenii GN=SNU13 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.563e-13
Identity = 39/121 (32.23%), Postives = 64/121 (52.89%), Query Frame = 3
Query:  135 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 497
            P A PLA   L+++ L +V+++   + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ +VPY++V SK  L  A    RP     V T        Q    K K +  L+
Sbjct:    6 PKAFPLADSALTQQILDVVQQSQNLRQLKKGANEATKTLNRGISEFIIMAADTEPIEILLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVIAASVTTNEASAMKNQIYGIKDKIETLLI 126          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: SNU13_ASHGO (13 kDa ribonucleoprotein-associated protein OS=Ashbya gossypii GN=SNU13 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.563e-13
Identity = 38/121 (31.40%), Postives = 65/121 (53.72%), Query Frame = 3
Query:  135 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 497
            P A PLA   L+++ L +V++A+  + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ +VPY++V S+  L  A    RP     + T        Q    K K +  L+
Sbjct:    7 PKAFPLADAALTQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETLLI 127          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: SNU13_CANAL (13 kDa ribonucleoprotein-associated protein OS=Candida albicans GN=SNU13 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.939e-13
Identity = 34/97 (35.05%), Postives = 57/97 (58.76%), Query Frame = 3
Query:  135 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLV 425
            P A PLA   L+++ L +V+++   + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ +VPY++V SK  L  A    RP     V
Sbjct:    6 PKAFPLADSALTQQILDVVQQSQNLRQLKKGANEATKTLNRGISEFIIMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVIAASV 102          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_THEON (50S ribosomal protein L7Ae OS=Thermococcus onnurineus (strain NA1) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.939e-13
Identity = 37/107 (34.58%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  162 KLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKG-ELGQEEQDKLK 479
            +L+++ L+ V  A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE ++PYIYV SK++L  A   + P   V ++ +P KG EL +E   K++
Sbjct:   14 ELAEKALEAVELARDTGRIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVPAASVAII-EPGKGRELVEEIAMKVR 119          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_SULIY (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.013e-12
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  123 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVL 428
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  +PY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_SULIN (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.013e-12
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  123 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVL 428
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  +PY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_SULIM (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.013e-12
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  123 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVL 428
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  +PY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
The following BLAST results are available for this feature:
BLAST of CF931497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
SNU13_YARLI1.197e-1333.8813 kDa ribonucleoprotein-associated protein OS=Yar... [more]
RL7A_NANEQ1.197e-1340.0050S ribosomal protein L7Ae OS=Nanoarchaeum equitan... [more]
NH2L1_DICDI1.197e-1331.25NHP2-like protein 1 homolog OS=Dictyostelium disco... [more]
SNU13_DEBHA1.563e-1332.2313 kDa ribonucleoprotein-associated protein OS=Deb... [more]
SNU13_ASHGO1.563e-1331.4013 kDa ribonucleoprotein-associated protein OS=Ash... [more]
SNU13_CANAL5.939e-1335.0513 kDa ribonucleoprotein-associated protein OS=Can... [more]
RL7A_THEON5.939e-1334.5850S ribosomal protein L7Ae OS=Thermococcus onnurin... [more]
RL7A_SULIY1.013e-1234.3150S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_SULIN1.013e-1234.3150S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_SULIM1.013e-1234.3150S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0568 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB259 similar to nhp2-like protein (acc# NP_196435), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF931497 ID=CF931497; Name=CF931497; organism=Citrus sinensis; type=EST; length=568bp
CTGAAAAAGAAAAACCCTAGCTCTGTTTCGTGCAATTCATTGAGAGAGAG
AACTGAAAGAAGAAAATGGGAAGCGACAGCGAAGCAGAGAGAACCCCACA
TAAAGATGAGAAGAAGAAGATTGTTAGTCTTGCTCCCATTGCTAAACCTC
TAGCTGGCAAGAAGCTCTCCAAAAGAACCCTCAAGCTTGTCCGTCGAGCT
GCTGAACACAAATGCTTGAAGAGAGGAGTGAAGGAAGTGGTCAAAAGTAT
CCGCCGTGGTCATAAAGGATTATGTGTTATAGCTGGGAACATTAGTCCAA
TTGACGTCATCACTCACGTTCCTATCTTATGTGAAGAGTCTGATGTTCCC
TACATTTATGTTGCTTCAAAAGAGGATCTTGCAAATGCAGGTGCCACAAA
GAGGCCAACATGCTGTGTTTTGGTGCTAACTAAGCCAACTAAGGGAGAAC
TAGGACAAGAGGAACAAGATAAGTTGAAAGCTGATTATACCCTCGTTGTA
GAGGATGTGAAGGAACTGGCATCCTCTCTTTTCTGATGAACTAGACTTAA
AGCCAACAAAGATGATTG
back to top