CF931497

Overview
NameCF931497
Unique NameCF931497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF931497_ssr42 microsatellite CF931497_ssr42:42..51. BLAST: Citrus ESTs to Prunus persica proteins V1
CF931497_ssr109 microsatellite CF931497_ssr109:109..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4756 contig Csv1_Contig4756:44..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_SULIL (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.013e-12
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  123 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVL 428
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  +PY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_SULIK (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.013e-12
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  123 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVL 428
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  +PY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_SULIA (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain M.16.27) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.013e-12
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  123 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVL 428
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  +PY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_PYRKO (50S ribosomal protein L7Ae OS=Pyrococcus kodakaraensis GN=rpl7ae PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.013e-12
Identity = 33/107 (30.84%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  159 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 479
            ++L+++ L+ V  A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE ++PY+YV SK++L  A   + P   V ++      EL ++   K+K
Sbjct:   13 QELAEKALEAVEIARDTGRIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYVYVPSKKELGAAAGLEVPAASVAIIEPGKARELVEDIAMKVK 119          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_SULSO (50S ribosomal protein L7Ae OS=Sulfolobus solfataricus GN=rpl7ae PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.323e-12
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  123 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVL 428
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L +IA ++ P +++ H+P+LC+E  +PY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_SULTO (50S ribosomal protein L7Ae OS=Sulfolobus tokodaii GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.728e-12
Identity = 40/120 (33.33%), Postives = 63/120 (52.50%), Query Frame = 3
Query:  165 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKELAS 524
            L+ + L  VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LCEE  +PY+YV SK+ L  A        C L +   +   +   E   L  +    VE++K  AS
Sbjct:   15 LANKVLDAVRKAKESGKIKKGTNETTKAVERGQAKLVVIATDVQPEEIVAHLPLLCEEKKIPYVYVPSKKALGEA--------CGLQVAAASAAIIDPGEAKDLLDEIVKRVEELKGKAS 126          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_PYRFU (50S ribosomal protein L7Ae OS=Pyrococcus furiosus GN=rpl7ae PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.257e-12
Identity = 34/107 (31.78%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  159 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 479
            K+L+++ L+ V  A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE ++PYIYV SK++L  A   +     V ++      +L +E   K+K
Sbjct:   13 KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVK 119          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_ARCFU (50S ribosomal protein L7Ae OS=Archaeoglobus fulgidus GN=rpl7ae PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.948e-12
Identity = 35/99 (35.35%), Postives = 55/99 (55.56%), Query Frame = 3
Query:  165 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQE 461
            +    L L+ +  E   +K+G  E  K++ RG   L  IA ++ P +++ H+P+LCEE +VPYIYV SK DL  A   + P     ++    +GEL +E
Sbjct:   11 MQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAAII---NEGELRKE 106          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_AERPE (50S ribosomal protein L7Ae OS=Aeropyrum pernix GN=rpl7ae PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.850e-12
Identity = 34/105 (32.38%), Postives = 60/105 (57.14%), Query Frame = 3
Query:  165 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 479
            L+++  + V+RA E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  +PY+YV SK+ L  A   +     V ++       L +E  +K+K
Sbjct:   15 LAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAIIEPGDAETLVREIVEKVK 119          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_PYRHO (50S ribosomal protein L7Ae OS=Pyrococcus horikoshii GN=rpl7ae PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 33/107 (30.84%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  159 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 479
            K+L+++ L+ V  A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE ++PYIYV SK++L  A   +     V ++      +L +E   K++
Sbjct:   13 KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVR 119          
The following BLAST results are available for this feature:
BLAST of CF931497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL7A_SULIL1.013e-1234.3150S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_SULIK1.013e-1234.3150S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_SULIA1.013e-1234.3150S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_PYRKO1.013e-1230.8450S ribosomal protein L7Ae OS=Pyrococcus kodakarae... [more]
RL7A_SULSO1.323e-1233.3350S ribosomal protein L7Ae OS=Sulfolobus solfatari... [more]
RL7A_SULTO1.728e-1233.3350S ribosomal protein L7Ae OS=Sulfolobus tokodaii ... [more]
RL7A_PYRFU2.257e-1231.7850S ribosomal protein L7Ae OS=Pyrococcus furiosus ... [more]
RL7A_ARCFU2.948e-1235.3550S ribosomal protein L7Ae OS=Archaeoglobus fulgid... [more]
RL7A_AERPE3.850e-1232.3850S ribosomal protein L7Ae OS=Aeropyrum pernix GN=... [more]
RL7A_PYRHO5.028e-1230.8450S ribosomal protein L7Ae OS=Pyrococcus horikoshi... [more]

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Properties
Property NameValue
Genbank descriptionEST0568 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB259 similar to nhp2-like protein (acc# NP_196435), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF931497 ID=CF931497; Name=CF931497; organism=Citrus sinensis; type=EST; length=568bp
CTGAAAAAGAAAAACCCTAGCTCTGTTTCGTGCAATTCATTGAGAGAGAG
AACTGAAAGAAGAAAATGGGAAGCGACAGCGAAGCAGAGAGAACCCCACA
TAAAGATGAGAAGAAGAAGATTGTTAGTCTTGCTCCCATTGCTAAACCTC
TAGCTGGCAAGAAGCTCTCCAAAAGAACCCTCAAGCTTGTCCGTCGAGCT
GCTGAACACAAATGCTTGAAGAGAGGAGTGAAGGAAGTGGTCAAAAGTAT
CCGCCGTGGTCATAAAGGATTATGTGTTATAGCTGGGAACATTAGTCCAA
TTGACGTCATCACTCACGTTCCTATCTTATGTGAAGAGTCTGATGTTCCC
TACATTTATGTTGCTTCAAAAGAGGATCTTGCAAATGCAGGTGCCACAAA
GAGGCCAACATGCTGTGTTTTGGTGCTAACTAAGCCAACTAAGGGAGAAC
TAGGACAAGAGGAACAAGATAAGTTGAAAGCTGATTATACCCTCGTTGTA
GAGGATGTGAAGGAACTGGCATCCTCTCTTTTCTGATGAACTAGACTTAA
AGCCAACAAAGATGATTG
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