CF931497

Overview
NameCF931497
Unique NameCF931497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF931497_ssr42 microsatellite CF931497_ssr42:42..51. BLAST: Citrus ESTs to Prunus persica proteins V1
CF931497_ssr109 microsatellite CF931497_ssr109:109..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4756 contig Csv1_Contig4756:44..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_PYRAB (50S ribosomal protein L7Ae OS=Pyrococcus abyssi GN=rpl7ae PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 33/107 (30.84%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  159 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 479
            K+L+++ L+ V  A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE ++PYIYV SK++L  A   +     V ++      +L +E   K++
Sbjct:   13 KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVR 119          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_THEGJ (50S ribosomal protein L7Ae OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.567e-12
Identity = 33/107 (30.84%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  159 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLK 479
            ++L+++ L+ V  A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE ++PYIYV SK++L  A   +     V ++      EL ++   K+K
Sbjct:   13 QELAEKALEAVEIARDTGRIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGLEVAAASVAIIEPGKARELVEDIAMKVK 119          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_METJA (50S ribosomal protein L7Ae OS=Methanocaldococcus jannaschii GN=rpl7ae PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.567e-12
Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  159 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGEL 452
            +++ K  L  V +A +   +K+G  EV K++ RG   L +IA ++ P +V+ H+P LCEE  +PY YVASK+DL  A   +     V ++ +    EL
Sbjct:   11 EEIQKELLDAVAKAQK---IKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEGDAEEL 105          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_META3 (50S ribosomal protein L7Ae OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 29/92 (31.52%), Postives = 59/92 (64.13%), Query Frame = 3
Query:  159 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTK 434
            +++ ++T +++ ++ +   +K+G  EV K++ RG   L V+A ++ P +++ H+PI+CEE  +PY Y+A+KEDL  A   +  T  V ++ +
Sbjct:   11 QEMEEKTAEVLSKSEK---VKKGANEVTKAVERGTAKLVVLAKDVQPEEIVAHIPIICEEKGIPYTYIATKEDLGKAIGLEVSTAAVAIIAE 99          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_PYRCJ (50S ribosomal protein L7Ae OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 39/115 (33.91%), Postives = 61/115 (53.04%), Query Frame = 3
Query:  141 AKPLAGKK----------LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLAN-AGATKRPTCCVLVLTKPTKGEL 452
            A PL GK           ++++ L+++  A +   +K+G  E  K++ RG   L +IA ++ P +V+ H+P+LCEE  VPY+YV SKE L   AG        V++      GEL
Sbjct:   12 ANPLPGKPFYVRFEVPSDVAEKALEILSIARQTGKIKKGTNETTKAVERGLAKLVLIAEDVDPPEVVAHLPLLCEEKKVPYVYVPSKEKLGKAAGINVAAAAAVVIEAGQAAGEL 126          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_SULAC (50S ribosomal protein L7Ae OS=Sulfolobus acidocaldarius GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.911e-11
Identity = 28/77 (36.36%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  159 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANA 389
            ++L+ + L+ V++A +   +K+G  E  K++ R    L VIA ++ P +++ H+P+LCEE  +PY+YV SK+ L  A
Sbjct:   13 QELADKVLEAVKKAKDSGKIKKGTNETTKAVERSQAKLVVIAEDVQPEEIVAHLPLLCEEKKIPYVYVPSKKSLGEA 89          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_PICTO (50S ribosomal protein L7Ae OS=Picrophilus torridus GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  165 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDL 380
            L K  L +V  + +   +++G  EVVKSI RG   L VIA ++SP +V+ ++P LCEE  VPY+YV  K DL
Sbjct:   13 LEKAVLDMVENSYKTGKVRKGTNEVVKSIERGESKLVVIAEDVSPAEVVYYLPTLCEERKVPYVYVKKKSDL 84          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_THEVO (50S ribosomal protein L7Ae OS=Thermoplasma volcanium GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  165 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLAN 386
            +S++ L LV  A     +K+G  EV+KSI RG   L VIA +++P +V+ ++P LCE+  VPY+YV  K DL +
Sbjct:   14 VSQKALDLVESAFRSGKIKKGTNEVIKSIERGESKLVVIAEDVNPPEVVYYLPSLCEDKKVPYVYVKKKADLGS 87          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_PYRAE (50S ribosomal protein L7Ae OS=Pyrobaculum aerophilum GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.256e-11
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 3
Query:  165 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLAN-AGATKRPTCCVLVLTKPTKGEL 452
            ++++ L+++  A +   +K+G  E  K++ RG   L +IA ++ P +V+ H+P+LCEE  VPY+YV SKE L   AG        V++      GEL
Sbjct:   30 VAEKALEILSIARQTGKIKKGTNETTKAVERGLAKLVLIAEDVDPPEVVAHLPLLCEEKKVPYVYVPSKEKLGKAAGINVSAAAAVVIEPGQAAGEL 126          
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_THENV (50S ribosomal protein L7Ae OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 3
Query:  165 LSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLAN-AGATKRPTCCVLVLTKPTKGEL 452
            ++++ L+++  A +   +K+G  E  K++ RG   L +IA ++ P +V+ H+P+LCEE  VPY+YV SKE L   AG        V++      GEL
Sbjct:   30 VAEKALEVLSVAKQTGKIKKGTNEATKAVERGLAKLVLIAEDVDPPEVVAHLPLLCEEKKVPYVYVPSKEKLGKAAGINVSAAAAVVIEPGQAAGEL 126          
The following BLAST results are available for this feature:
BLAST of CF931497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL7A_PYRAB5.028e-1230.8450S ribosomal protein L7Ae OS=Pyrococcus abyssi GN... [more]
RL7A_THEGJ6.567e-1230.8450S ribosomal protein L7Ae OS=Thermococcus gammato... [more]
RL7A_METJA6.567e-1235.7150S ribosomal protein L7Ae OS=Methanocaldococcus j... [more]
RL7A_META38.576e-1231.5250S ribosomal protein L7Ae OS=Methanococcus aeolic... [more]
RL7A_PYRCJ1.463e-1133.9150S ribosomal protein L7Ae OS=Pyrobaculum calidifo... [more]
RL7A_SULAC1.911e-1136.3650S ribosomal protein L7Ae OS=Sulfolobus acidocald... [more]
RL7A_PICTO2.495e-1145.8350S ribosomal protein L7Ae OS=Picrophilus torridus... [more]
RL7A_THEVO3.259e-1143.2450S ribosomal protein L7Ae OS=Thermoplasma volcani... [more]
RL7A_PYRAE4.256e-1135.0550S ribosomal protein L7Ae OS=Pyrobaculum aerophil... [more]
RL7A_THENV5.559e-1135.0550S ribosomal protein L7Ae OS=Thermoproteus neutro... [more]

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Properties
Property NameValue
Genbank descriptionEST0568 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB259 similar to nhp2-like protein (acc# NP_196435), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF931497 ID=CF931497; Name=CF931497; organism=Citrus sinensis; type=EST; length=568bp
CTGAAAAAGAAAAACCCTAGCTCTGTTTCGTGCAATTCATTGAGAGAGAG
AACTGAAAGAAGAAAATGGGAAGCGACAGCGAAGCAGAGAGAACCCCACA
TAAAGATGAGAAGAAGAAGATTGTTAGTCTTGCTCCCATTGCTAAACCTC
TAGCTGGCAAGAAGCTCTCCAAAAGAACCCTCAAGCTTGTCCGTCGAGCT
GCTGAACACAAATGCTTGAAGAGAGGAGTGAAGGAAGTGGTCAAAAGTAT
CCGCCGTGGTCATAAAGGATTATGTGTTATAGCTGGGAACATTAGTCCAA
TTGACGTCATCACTCACGTTCCTATCTTATGTGAAGAGTCTGATGTTCCC
TACATTTATGTTGCTTCAAAAGAGGATCTTGCAAATGCAGGTGCCACAAA
GAGGCCAACATGCTGTGTTTTGGTGCTAACTAAGCCAACTAAGGGAGAAC
TAGGACAAGAGGAACAAGATAAGTTGAAAGCTGATTATACCCTCGTTGTA
GAGGATGTGAAGGAACTGGCATCCTCTCTTTTCTGATGAACTAGACTTAA
AGCCAACAAAGATGATTG
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