CF931497

Overview
NameCF931497
Unique NameCF931497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF931497_ssr42 microsatellite CF931497_ssr42:42..51. BLAST: Citrus ESTs to Prunus persica proteins V1
CF931497_ssr109 microsatellite CF931497_ssr109:109..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4756 contig Csv1_Contig4756:44..611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_METMP (50S ribosomal protein L7Ae OS=Methanococcus maripaludis GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 34/110 (30.91%), Postives = 65/110 (59.09%), Query Frame = 3 
Query:  159 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQ--EEQDKLKA 482
            ++L ++T ++V  A +   +K+G  EV K++ +G   L VIA ++ P +++ H+P++C+E  + Y Y ++KE L  A   + PT  + V+ + +  EL    E+ + LKA
Sbjct:   11 QELEEKTAEVVANAEK---IKKGANEVTKAVEKGIAKLVVIAQDVQPEEIVAHIPVICDEKGIAYSYSSTKEALGKAAGLEVPTSAIAVVAEGSADELKDLVEKLNGLKA 117
[Close]
BLAST of CF931497 vs. ExPASy Swiss-Prot
Match: RL7A_METST (50S ribosomal protein L7Ae OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 39/120 (32.50%), Postives = 65/120 (54.17%), Query Frame = 3 
Query:  159 KKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDVPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 518
            K+++ +  + +  A +   + +G  EV K+I R +  L VIA +I P +++ H+PIL EE ++PY+Y+ +KE+L  A      T    ++     GE GQE  D+       +VE V EL
Sbjct:   13 KEIADKVYEALEIARDTGKIGKGTNEVTKNIERNNVALAVIAEDIEPAEIVAHLPILAEEKEIPYVYLPTKEELGEAAGLNVGTASACII---DAGE-GQELVDE-------IVEKVAEL 121
The following BLAST results are available for this feature:
BLAST of CF931497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL7A_METMP5.559e-1130.9150S ribosomal protein L7Ae OS=Methanococcus maripa... [more]
RL7A_METST9.482e-1132.5050S ribosomal protein L7Ae OS=Methanosphaera stadt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0568 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB259 similar to nhp2-like protein (acc# NP_196435), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF931497 ID=CF931497; Name=CF931497; organism=Citrus sinensis; type=EST; length=568bp
CTGAAAAAGAAAAACCCTAGCTCTGTTTCGTGCAATTCATTGAGAGAGAG
AACTGAAAGAAGAAAATGGGAAGCGACAGCGAAGCAGAGAGAACCCCACA
TAAAGATGAGAAGAAGAAGATTGTTAGTCTTGCTCCCATTGCTAAACCTC
TAGCTGGCAAGAAGCTCTCCAAAAGAACCCTCAAGCTTGTCCGTCGAGCT
GCTGAACACAAATGCTTGAAGAGAGGAGTGAAGGAAGTGGTCAAAAGTAT
CCGCCGTGGTCATAAAGGATTATGTGTTATAGCTGGGAACATTAGTCCAA
TTGACGTCATCACTCACGTTCCTATCTTATGTGAAGAGTCTGATGTTCCC
TACATTTATGTTGCTTCAAAAGAGGATCTTGCAAATGCAGGTGCCACAAA
GAGGCCAACATGCTGTGTTTTGGTGCTAACTAAGCCAACTAAGGGAGAAC
TAGGACAAGAGGAACAAGATAAGTTGAAAGCTGATTATACCCTCGTTGTA
GAGGATGTGAAGGAACTGGCATCCTCTCTTTTCTGATGAACTAGACTTAA
AGCCAACAAAGATGATTG
back to top