CK739523

Overview
NameCK739523
Unique NameCK739523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.754e-12
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:  189 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 259          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.754e-12
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:  189 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 259          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.754e-12
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 261          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.754e-12
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:  190 YPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 260          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.754e-12
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 3
Query:   24 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 248
            +VGYPGG+ F+PL +        +E + KE+ NGRLAMLA +G   QH  TG GP +NL+ HL+DP H T+   F
Sbjct:  182 EVGYPGGI-FNPLNFAP-----TQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.754e-12
Identity = 42/77 (54.55%), Postives = 50/77 (64.94%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP--GHATVFAA-FTP 254
            YPGG  FDPLG     PE   EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL  HLADP   +A  +A  FTP
Sbjct:  189 YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTP 263          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.754e-12
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 3
Query:   18 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 221
            G D  YPGG  FDPLG     P+   EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL  H+ADP
Sbjct:  182 GLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.754e-12
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 3
Query:   18 GTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 221
            G D  YPGG  FDPLG     P+   EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL  H+ADP
Sbjct:  182 GLDKVYPGGA-FDPLGLAD-DPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.754e-12
Identity = 39/73 (53.42%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 261          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.754e-12
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            YPGG  FDPLG     PE+  EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:  188 YPGGS-FDPLGLAE-DPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 258          
The following BLAST results are available for this feature:
BLAST of CK739523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB2B_SOLLC1.754e-1253.42Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SOLLC1.754e-1253.42Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB24_TOBAC1.754e-1253.42Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_PETSP1.754e-1253.42Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB24_ARATH1.754e-1248.00Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_POLMU1.754e-1254.55Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB23_ORYSJ1.754e-1254.41Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.754e-1254.41Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_NICPL1.754e-1253.42Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB23_APIGR1.754e-1252.05Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6361 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739523 ID=CK739523; Name=CK739523; organism=Citrus sinensis; type=EST; length=402bp
CCAACAACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGCTTTGG
TTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGGAGCT
GAGGACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTGATGG
GTGCTTGGTTCCAGCACATTTACACCGGCACCGGCCCCATTGACAATCTC
ATTGCTCACCTTGCTGATCCTGGTCATGCCACCGTTTTTGCTGCCTTCAC
CCCCAAGTGAGATGATGACGAACAAAGGGAGAGAAATTTGGGCCAAGTGG
AAGCTTGAGATCAAAGGAATTGGTGTTTCTCTTAGGGAAAGGTTGTATGA
TTAGAACTTGTATTAATTGCCTCTATCTATGTACAAAGACTTGTGTGATC
AC
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