CK739523

Overview
NameCK739523
Unique NameCK739523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.105e-12
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            YPGG  FDPLG     PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  H+ADP +   +A  T
Sbjct:  186 YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYAT 256          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 3
Query:   21 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            TD  YPGG  FDPL      PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLA+P +   +A  T
Sbjct:  165 TDPIYPGGS-FDPLALAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYAT 239          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12
Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = 3
Query:   24 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            D+ YPGG  FDPL      PE   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:   45 DLLYPGGS-FDPLA-SLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 118          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.137e-11
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            YPGG  FDPLG     PE   +++ KE+KNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:  189 YPGGT-FDPLGLAD-DPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 259          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.137e-11
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 221
            YPGG  FDPLG     PE   EL+ KE+KNGRLAM ++ G + Q I TG GP++NL  HL+DP
Sbjct:  192 YPGGS-FDPLGLAD-DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 252          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.137e-11
Identity = 36/63 (57.14%), Postives = 42/63 (66.67%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 221
            YPGG  FDPLG     PE   EL+ K IKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.137e-11
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            YPGG  FDPLG     PE   EL+ KE+K GRLAML++ G + Q I TG GP++NL  H+ADP +   +A  T
Sbjct:  189 YPGGS-FDPLGLAD-DPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYAT 259          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.137e-11
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            YPGG  FDPLG    + E   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP +   +A  T
Sbjct:  188 YPGGS-FDPLGLADDA-EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFAT 258          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.533e-11
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 251
            YPGG +FDPLG  S  P K  +L+  EIK+ RLAM+  +G   Q   TG GP++N   HL+DP H T+   F+
Sbjct:  214 YPGGKFFDPLGLAS-DPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285          
BLAST of CK739523 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.533e-11
Identity = 35/63 (55.56%), Postives = 41/63 (65.08%), Query Frame = 3
Query:   33 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADP 221
            YPGG  FDPLG     PE   EL+ KE KNGRLAM ++ G + Q I TG GP++NL  HL DP
Sbjct:  191 YPGGS-FDPLGLAE-DPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDP 251          
The following BLAST results are available for this feature:
BLAST of CK739523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB21_MAIZE5.105e-1250.68Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_SOYBN6.667e-1250.65Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_RAPSA6.667e-1251.32Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB29_MAIZE1.137e-1149.32Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB28_PEA1.137e-1155.56Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB25_TOBAC1.137e-1157.14Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_MAIZE1.137e-1150.68Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_HORVU1.137e-1152.05Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB4B_ARATH2.533e-1146.58Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB22_PETSP2.533e-1155.56Chlorophyll a-b binding protein 22L, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6361 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739523 ID=CK739523; Name=CK739523; organism=Citrus sinensis; type=EST; length=402bp
CCAACAACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGCTTTGG
TTTGACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGGAGCT
GAGGACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTGATGG
GTGCTTGGTTCCAGCACATTTACACCGGCACCGGCCCCATTGACAATCTC
ATTGCTCACCTTGCTGATCCTGGTCATGCCACCGTTTTTGCTGCCTTCAC
CCCCAAGTGAGATGATGACGAACAAAGGGAGAGAAATTTGGGCCAAGTGG
AAGCTTGAGATCAAAGGAATTGGTGTTTCTCTTAGGGAAAGGTTGTATGA
TTAGAACTTGTATTAATTGCCTCTATCTATGTACAAAGACTTGTGTGATC
AC
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