CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5829 contig Csv1_Contig5829:975..1547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.087e-41
Identity = 88/175 (50.29%), Postives = 118/175 (67.43%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKAD----VEKFASSFDMPGF 513
            HNH I A+AVALKQA TP F+ Y+ Q+  NA A+ N L  +GYSLV+GGT+NHLVL DLRP GL G + E++ +L +IT NKN   GD SA+ PGG+R+G PA+TSRG LE DF ++  F+   V + LE++ +  K L+DF   L+ + +     AD    VE+FA +F MPGF
Sbjct:  328 HNHAIAAVAVALKQACTPMFREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKTTK-LQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGF 501          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.532e-40
Identity = 86/185 (46.49%), Postives = 124/185 (67.03%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKYKD 540
            HNH I  LAVALKQA+TP ++AY +QV +N+      L  KGY LV+GGT+NHLVL +++  G+ G++VEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG LE+DF ++ +F   AV + ++++ E  G  LKDF   L ++     +I  L+ DVE++A  F   GF+   MKYK+
Sbjct:  334 HNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.001e-40
Identity = 88/184 (47.83%), Postives = 121/184 (65.76%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN---KDIEALKADVEKFASSFDMPGFKMSEMKYKD 540
            HNH I  LAVALKQA+T  +KAY +QV +N+      L   GY LV+GGTENHLVL +L+  G+ G+KVEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++  F   AV L ++I+ E  G  LKDF   + ++    +I  L+ DVE++A  F   GF+   MKYK+
Sbjct:  334 HNHTITGLAVALKQATTAEYKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 3.413e-40
Identity = 82/174 (47.13%), Postives = 110/174 (63.22%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 510
            HNH I  +AVALKQ  +  F  Y +Q+  NA  L   L   GYSL TGGT+NHL+L DLRP+G+ G + E + DL +I  NKN   GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F+H  V +  +   E GK LKDF      N    +++  L   VE+F+  F++PG
Sbjct:  334 HNHTIAGIAVALKQCLSEDFVQYGEQILKNAKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKAFTATNEQFKQEVAELAKRVEEFSGKFEIPG 507          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 4.457e-40
Identity = 82/174 (47.13%), Postives = 111/174 (63.79%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 510
            HNH I  +AVAL+Q  +  F  Y +QV  NA  L   +   GY+L TGGT+NHL+L DLRP+G+ G + E + DL +I  NKN   GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F+H  V +  +   E GK LKDF      N    KD+  L   VE+F++ F++PG
Sbjct:  330 HNHTIAGIAVALRQCLSEDFVQYGEQVLKNAKTLAERMKKHGYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKSFTETNEPFKKDVADLAKRVEEFSTKFEIPG 503          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 9.930e-40
Identity = 85/175 (48.57%), Postives = 118/175 (67.43%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKD----IEALKADVEKFASSFDMPGF 513
            HNH I A+AVALKQA TP F+ Y+ QV  NA A+ + L  +GYSLV+GGT+NHLVL DLRP GL G + E++ +L +IT NKN   GD SA+ PGG+R+G PA+TSR   E DF ++ +F+   V + LE++ +  K L+DF   L+ + +    +  L+  VE+FA +F MPGF
Sbjct:  328 HNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAK-LQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGF 501          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.297e-39
Identity = 85/175 (48.57%), Postives = 118/175 (67.43%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKAD----VEKFASSFDMPGF 513
            HNH I A+AVALKQA TP F+ Y+ QV  NA A+ + L  +GYSLV+GGT+NHLVL DLRP GL G + E++ +L +IT NKN   GD SA+ PGG+R+G PA+TSR   E DF ++ +F+   V + LE++++  K L+DF   L+ + +     AD    V++FA +F MPGF
Sbjct:  328 HNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKRKTAK-LQDFKSFLLKDPETSQHLADLRRRVQQFARAFPMPGF 501          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.212e-39
Identity = 86/184 (46.74%), Postives = 119/184 (64.67%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN---KDIEALKADVEKFASSFDMPGFKMSEMKYKD 540
            HNH I  LAVALKQA+T  +KAY +QV +N       L   GY LV+GGTENHLVL +L+  G+ G++VEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++      AV L ++I+ E  G  LKDF   + ++    +I  L+ DVE++A  F   GF+   MKYK+
Sbjct:  334 HNHTITGLAVALKQATTAEYKAYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 4.172e-38
Identity = 91/175 (52.00%), Postives = 116/175 (66.29%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ----KEYGKLLKDFNKGLVNN--KDIEALKADVEKFASSFDMP 507
            HNH I ALAVALKQA++P FK Y ++V ANA AL   L   GY LV+ GT++H+VL DLRP+G+ G +VE L +  NIT NKNAV GD SAL PGG+RIGTPAMTSRG  E DFE++  F+  AV L  EIQ    KE  K  KDF   +  +    I  LK ++  ++++F +P
Sbjct:  297 HNHTITALAVALKQAASPEFKEYQQKVVANAKALEKKLKELGYKLVSDGTDSHMVLVDLRPIGVDGARVEFLLEQINITCNKNAVPGDKSALTPGGLRIGTPAMTSRGFGEADFEKVAVFVDEAVKLCKEIQASLPKEANK-QKDFKAKIATSDIPRINELKQEIAAWSNTFPLP 470          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.294e-38
Identity = 86/190 (45.26%), Postives = 118/190 (62.11%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYL------TGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQK------------EYGKLLKDFNKGLVNNK---DIEALKADVEKFASSFDMP 507
            HNH I ALAVALKQA TP F+AY  QV ANA AL   L       G GY++V+GGT+NHLVL DL+P G+ G++VE++ +L  +  NKN V GD SAL PGG+RIGTPAMT+RG  E+DF ++ + + RAVT+ + I K            +    +K F   L N +   +I  L+++VE +  ++  P
Sbjct:  333 HNHTIAALAVALKQAQTPEFRAYQSQVLANATALAARLGEPKDKNGLGYTIVSGGTDNHLVLIDLKPQGIDGSRVERVLELVGVAANKNTVPGDKSALTPGGLRIGTPAMTTRGFTEEDFARVADIIDRAVTIAVRINKAAKEDAVKKGNEKAANRVKTFMDYLGNGETDPEIVQLRSEVESWVGTYPCP 522          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_BOVIN3.087e-4150.29Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_SOLTU1.532e-4046.49Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR2.001e-4047.83Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYC_CAEBR3.413e-4047.13Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_CAEEL4.457e-4047.13Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_HUMAN9.930e-4048.57Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_RABIT1.297e-3948.57Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYN_FLAPR2.212e-3946.74Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYC_NEUCR4.172e-3852.00Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYM_NEUCR9.294e-3845.26Putative serine hydroxymethyltransferase, mitochon... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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