CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_CHLP8 (Serine hydroxymethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glyA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.103e-22
Identity = 57/125 (45.60%), Postives = 75/125 (60.00%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 378
            H I   AVA  +A  P FKAYA+Q+K NA A+        Y +V+GGT+NHL+L DLR   + G   E L     ITVNKN V F D S     G+R+GTPAMT+RG+   + E+I EF+ R ++
Sbjct:  282 HIIAGKAVAFGEALQPEFKAYAQQIKDNAAAMAAKFLAADYHIVSGGTKNHLMLLDLRNKNVNGKVAENLLHDAGITVNKNMVPFDDKSPFVTSGIRVGTPAMTTRGMKVAEAEKIVEFIDRVIS 406          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_CHLAD (Serine hydroxymethyltransferase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=glyA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.103e-22
Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVA  +A  P FK YA Q++ NA AL   L  +G +LV+GGT+NHL+L DLR  GLTG + ++  D   ITVNKNA+  D    +   G+RIGTPA+T+RG+ E++  QI  ++
Sbjct:  262 HVIAGKAVAFGEALRPEFKQYAAQIRRNAKALAEGLHAQGLTLVSGGTDNHLMLVDLRSTGLTGAQAQRALDKAAITVNKNAIPDDPQPPMKTSGIRIGTPAVTTRGMREREMAQIAAWI 381          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_BRASO (Serine hydroxymethyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=glyA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.103e-22
Identity = 57/120 (47.50%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA  +A  P FKAYAK V  NA AL   L  +G+ +V+GGT+NHL+L DLRP GL GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G  +
Sbjct:  277 HVIAAKAVAFAEALRPEFKAYAKNVVENAKALAESLRAQGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAAITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVGSLI 396          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_RICBR (Serine hydroxymethyltransferase OS=Rickettsia bellii (strain RML369-C) GN=glyA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.441e-22
Identity = 56/120 (46.67%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA  ++  P +K+Y KQV  NA AL   L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F  +S     G+R+GTPA T+RG  EKDF  +G  +
Sbjct:  266 HIIAAKAVAFLESLQPEYKSYIKQVIINAKALAGSLQERGYDILTGGTDNHIVLVDLRKDGITGKIAANSLDRAGITCNKNAIPFDKTSPFITSGIRLGTPACTTRGFKEKDFVLVGHLI 385          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_RICB8 (Serine hydroxymethyltransferase OS=Rickettsia bellii (strain OSU 85-389) GN=glyA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.441e-22
Identity = 56/120 (46.67%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA  ++  P +K+Y KQV  NA AL   L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F  +S     G+R+GTPA T+RG  EKDF  +G  +
Sbjct:  266 HIIAAKAVAFLESLQPEYKSYIKQVIINAKALAGSLQERGYDILTGGTDNHIVLVDLRKDGITGKIAANSLDRAGITCNKNAIPFDKTSPFITSGIRLGTPACTTRGFKEKDFVLVGHLI 385          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_RHOPB (Serine hydroxymethyltransferase OS=Rhodopseudomonas palustris (strain BisB18) GN=glyA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.441e-22
Identity = 61/135 (45.19%), Postives = 76/135 (56.30%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 408
            H I A AVA K+A  P FK YAK V  NA AL   L G G+ +V+GGT+NHL+L DLRP  L GN  EK      IT NKN + +         G+R+GTPA T+RG    +F+Q+G  +  A  L    Q E G
Sbjct:  284 HVIAAKAVAFKEALQPDFKVYAKNVVENAKALAETLRGHGFDIVSGGTDNHLMLVDLRPKSLKGNVSEKALVRAGITCNKNGIPYDPEKPFVTSGIRLGTPAATTRGFGVAEFQQVGGMI--AEVLNAIAQSEDG 416          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA1_RHOPA (Serine hydroxymethyltransferase 1 OS=Rhodopseudomonas palustris GN=glyA1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.441e-22
Identity = 57/120 (47.50%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA K+A  P FK Y K V  NA AL   L   G+ LV+GGT+NHL+L DLRP GL GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G  +
Sbjct:  276 HVIAAKAVAFKEALQPDFKVYTKNVVENAKALAETLRSAGFDLVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAGITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVGHLI 395          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_THEYD (Serine hydroxymethyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glyA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.881e-22
Identity = 59/147 (40.14%), Postives = 86/147 (58.50%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV------TLTLEIQKEYGKLLKDF 426
            H I A AVA K+A +  FK Y K+V  NA  L   L  KG+ LV+ GT+NHL+L DL    +TG + E+  D   ITVNKN + F         G+RIGTP++T+RG+ E++ E+I E + R +      ++  ++QK+  +L K F
Sbjct:  263 HVIAAKAVAFKEALSEDFKEYQKKVIKNAKTLAEALKKKGFKLVSDGTDNHLMLVDLTNFNITGKEAEEALDKAGITVNKNTIPFDTKPPTVTSGIRIGTPSVTTRGMGEEEMEKIAEIIERVIKNISNDSVIKDMQKKVQELCKKF 409          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SULSY (Serine hydroxymethyltransferase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=glyA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.881e-22
Identity = 66/167 (39.52%), Postives = 91/167 (54.49%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 504
            H I A AVA  +A T  FK YA+QV  NA AL   L  +G  +V+GGT++H++L DLRPL + GN+ E+     NITVNKNA+ F         G+R+GT A+T+RG+ E D  +I               K   K+LK+    L N K I+  + DV    SS+ +
Sbjct:  262 HVIAAKAVAFGEALTEDFKKYAEQVVKNARALAEELMAEGLRIVSGGTDSHMMLVDLRPLNVKGNQAEEALGKANITVNKNAIPFDPEKPTVTSGIRLGTAALTTRGMKENDMRRIA--------------KNIVKVLKN----LDNEKVIQEARDDVLSLCSSYPL 410          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_RICM5 (Serine hydroxymethyltransferase OS=Rickettsia massiliae (strain Mtu5) GN=glyA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.881e-22
Identity = 63/158 (39.87%), Postives = 86/158 (54.43%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 477
            H I A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +                  G ++ D   GL NN+D   L+  V
Sbjct:  266 HIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKFAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLV------------------GYMVADILDGLKNNEDNSDLEQKV 405          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CHLP81.103e-2245.60Serine hydroxymethyltransferase OS=Chlorobaculum p... [more]
GLYA_CHLAD1.103e-2246.67Serine hydroxymethyltransferase OS=Chloroflexus ag... [more]
GLYA_BRASO1.103e-2247.50Serine hydroxymethyltransferase OS=Bradyrhizobium ... [more]
GLYA_RICBR1.441e-2246.67Serine hydroxymethyltransferase OS=Rickettsia bell... [more]
GLYA_RICB81.441e-2246.67Serine hydroxymethyltransferase OS=Rickettsia bell... [more]
GLYA_RHOPB1.441e-2245.19Serine hydroxymethyltransferase OS=Rhodopseudomona... [more]
GLYA1_RHOPA1.441e-2247.50Serine hydroxymethyltransferase 1 OS=Rhodopseudomo... [more]
GLYA_THEYD1.881e-2240.14Serine hydroxymethyltransferase OS=Thermodesulfovi... [more]
GLYA_SULSY1.881e-2239.52Serine hydroxymethyltransferase OS=Sulfurihydrogen... [more]
GLYA_RICM51.881e-2239.87Serine hydroxymethyltransferase OS=Rickettsia mass... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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