CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 3.905e-36
Identity = 80/172 (46.51%), Postives = 115/172 (66.86%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKD-IEALKADVEKFASSFDM 504
            HNH I ALA ALKQA+TP FK Y +QV  NA AL +  T KGY LV+ GT++H+VL  L+   + G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RGL E+DF++I  ++  AV    E+Q +  K    LKDF   +  + + ++A++ ++ ++A SF +
Sbjct:  297 HNHTIAALATALKQANTPEFKEYQEQVLKNAKALESEFTKKGYKLVSDGTDSHMVLVSLKDKQIDGARVETVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGLGEEDFKKIVSYIDFAVNYAKEVQSQLPKDANKLKDFKNAVSGDSEKLKAVRDEIYQWAGSFPL 468          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.699e-36
Identity = 75/177 (42.37%), Postives = 113/177 (63.84%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ-------KEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 510
            HNH I ALAVALKQA TP F  Y KQV +NA A G+ L  +G+ LV+GGT+NHL+L +L  +G+ G ++E + +  NI  NKN + GD SAL P G+R+GTPAMT+RG  E+DF+++ E++  AV L++ ++       K+    L  F +    ++ ++ L  +V  +  +F +PG
Sbjct:  307 HNHTISALAVALKQAKTPEFVEYQKQVVSNAKAFGDELLKRGFELVSGGTDNHLLLLNLSNMGIDGARLEAILEKINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFQEQDFKKVAEYIDNAVKLSIALKSQESADAKDVRSKLNSFKQLCDQSEPVQKLAEEVSSWVGTFPVPG 483          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.364e-35
Identity = 85/177 (48.02%), Postives = 109/177 (61.58%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ----KEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMP 507
            HNH I ALAVAL QA TP F  Y K V +NA A+ N    +GY LV+GGT+ HLVL DL   G+ G +VE++ +L NI+ NKN V GD SAL P G+R+GTPA T+RG  EKDFE++ E +   V+LT +I     KE     +DF K  V +     +I  LK +V  +A  FD P
Sbjct:  296 HNHTITALAVALGQAKTPEFYQYQKDVLSNAKAMANAFITRGYKLVSGGTDTHLVLVDLTDKGVDGARVERILELVNISANKNTVPGDKSALIPRGLRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINEAALKEGKSKFRDF-KAYVGDGSKFSEIAKLKKEVITWAGKFDFP 471          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.641e-34
Identity = 77/172 (44.77%), Postives = 109/172 (63.37%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKDI-EALKADVEKFASSFDM 504
            HNH I ALA ALKQA+TP FK Y  QV  NA AL +     GY LV+ GT++H+VL  LR  G+ G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I +++++AV    ++Q+   K    LKDF   +    D+    K ++  +A  + +
Sbjct:  296 HNHTIAALATALKQAATPEFKEYQTQVLKNAKALESEFKNLGYRLVSNGTDSHMVLVSLREKGVDGARVEYICEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVQYINKAVEFAQQVQQSLPKDACRLKDFKAKVDEGSDVLNTWKKEIYDWAGEYPL 467          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.094e-33
Identity = 76/177 (42.94%), Postives = 106/177 (59.89%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKD-------IEALKADVEKFASSFDMPG 510
            HNH I ALAVALKQA+TP FK Y   V  NA   G  L  KG+ LV+GGT+ HL+L +L  LG+ G ++E L +  NI  NKN + GD SAL P G+R+GTPAMT+RG   ++F Q+  ++ RAV L + I+ +     KD    L + K+       ++ L  +V ++   F +PG
Sbjct:  320 HNHTISALAVALKQAATPEFKEYQAAVVENARIFGEELVKKGFELVSGGTDTHLILINLSNLGIDGARLETLLENINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFGPQEFAQVAAYIDRAVKLAIGIKSQESPDAKDARSKLASFKELCKESDQVKQLADEVYQWVGEFPVPG 496          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.278e-33
Identity = 78/172 (45.35%), Postives = 106/172 (61.63%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKD-IEALKADVEKFASSFDM 504
            HNH I ALA ALKQA+TP FK Y  QV  NA AL N     GY LV+ GT++H+VL  LR  G+ G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I  ++ +AV    + Q    K    LKDF   +    D +  LK ++  + + + +
Sbjct:  296 HNHTIAALATALKQAATPEFKEYQTQVLKNAKALENEFQTLGYRLVSNGTDSHMVLVSLREKGVDGARVEYVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVRYIDQAVKFAEQTQSSLPKEANKLKDFKAKVDEIADQLAPLKKEIYDWTAEYPL 467          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.176e-32
Identity = 72/164 (43.90%), Postives = 102/164 (62.20%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFAS 492
            HNH I ALAVALKQA+TP FK Y   V  NA   G  L+ +G+SLV+GGT+ HL+L DL P+G+ G+++E + +  NI  NKN + GD SAL P G+R+GTPAMT+RG    +F ++  +++ AV L + ++ +     KD    L + K   A    V K A+
Sbjct:  319 HNHTISALAVALKQAATPEFKNYQTAVVENAKVFGEELSKRGFSLVSGGTDTHLLLIDLSPMGIDGSRLETILERLNIAANKNTIPGDKSALYPSGLRVGTPAMTTRGFGPAEFGRVAAYINEAVKLAIGLKSQEPVDAKDAKTRLAHFKSFCAESEQVTKLAN 482          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYM_CANAL (Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.006e-32
Identity = 73/175 (41.71%), Postives = 109/175 (62.29%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ-KEYGK----LLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 510
            HNH I ALAVALKQ + P +  Y ++V +NA    + L  KG+ LV+ GT+ HL+L DLR   + G +VE + +  NI  NKN V GD SAL P G+R+GTPAMT+RG   ++F+++ EF+ +AV + +E++ +E GK    LL  F K    +  ++ L  +V  + S + +PG
Sbjct:  317 HNHTISALAVALKQCTEPEYVKYQQEVVSNAKHFADALVSKGFKLVSDGTDTHLILVDLRSRNIDGARVEAVLERANIAANKNTVPGDVSALFPSGLRVGTPAMTTRGFGPEEFDKVAEFIDQAVNIAIELKAQEQGKVPKELLASFKKLADESDKVKQLDKEVVSWVSKYPVPG 491          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.619e-32
Identity = 74/174 (42.53%), Postives = 106/174 (60.92%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNK---DIEALKADVEKFASSFDM 504
            HNH I ALAVALKQ   PA+K Y  QV  NA         +GY L   GT++H+VL D++  G+ G + E++ +L NI  NKN V  D SA +P G+R+GTPAMT+RG  E+DF ++ +++ RA+T    +QKE  K    LKDF   L   +   ++  L+ +V ++ASSF +
Sbjct:  290 HNHTITALAVALKQCQEPAYKEYQAQVVKNAKVCEEEFKKRGYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSDKSAFSPSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKELPKDANKLKDFKAKLGEGEQYPELVQLQKEVAEWASSFPL 463          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.421e-32
Identity = 76/173 (43.93%), Postives = 105/173 (60.69%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKD-IEALKADVEKFASSFDMP 507
            HNH I ALA ALKQA+TP F+ Y + V  NA  L        Y LV+ GT++H+VL  LR  G+ G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I  +++RAV +   IQ+   K    LKDF   +    D I  L  ++  +   + +P
Sbjct:  296 HNHTISALATALKQATTPEFREYQELVLKNAKVLETEFKKLNYRLVSDGTDSHMVLVSLREKGVDGARVEHVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFARIVGYINRAVEIARSIQQSLPKEANRLKDFKAKVEGGTDEIAQLAQEIYSWTEEYPLP 468          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_CANAL3.905e-3646.51Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYM_CANGA8.699e-3642.37Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_SCHPO7.364e-3548.02Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_YEAST1.641e-3444.77Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYM_KLULA3.094e-3342.94Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CANGA5.278e-3345.35Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYM_ASHGO1.176e-3243.90Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_CANAL2.006e-3241.71Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYD_SCHPO2.619e-3242.53Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_ASHGO3.421e-3243.93Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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