CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 5.835e-32
Identity = 73/177 (41.24%), Postives = 106/177 (59.89%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL-----TLE--IQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 510
            HNH IGA+AVALKQA +P FK Y +++  N+      LT  GY LV+GGT+NHL++ DL    + G +VE +    NI  NKN + GD SAL P G+RIGTPAMT+RG   ++F Q+ +++  AV L     TLE   + +    L +F K    + ++ AL  ++ K+   + +PG
Sbjct:  312 HNHTIGAMAVALKQAMSPEFKEYQQKIVDNSKWFAQELTKMGYKLVSGGTDNHLIVIDLSGTQVDGARVETILSALNIAANKNTIPGDKSALFPSGLRIGTPAMTTRGFGREEFSQVAKYIDSAVKLAENLKTLEPTTKLDARSRLNEFKKLCNESSEVAALSGEISKWVGQYPVPG 488          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SYMTH (Serine hydroxymethyltransferase OS=Symbiobacterium thermophilum GN=glyA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.997e-28
Identity = 66/125 (52.80%), Postives = 82/125 (65.60%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 378
            H I A AVA KQ S P ++AY  QV  NA AL   L  +GY LVTGGT+NHL+L DLRP G+TG   E L D  +ITVNKNA+  D    +   G+RIGTPAMT+RG+ E +  QI + + RA+T
Sbjct:  261 HIIAAKAVAFKQLSDPDYRAYCGQVVKNAKALAQALLERGYRLVTGGTDNHLMLVDLRPKGITGRDAEHLLDRVSITVNKNAIPNDPEKPMVTSGIRIGTPAMTTRGMKEAEMVQIADLIDRAIT 385          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_HELMI (Serine hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glyA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.112e-28
Identity = 65/121 (53.72%), Postives = 80/121 (66.12%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLH 366
            H I A AVA ++A  PAF AY KQ+ ANA AL   LT +G+ LV+GGT+NHL+L DLR   LTG + EK  D C ITVNKNA+ F   S     G+RIGTPA TSRG+ E   +Q+ E +H
Sbjct:  264 HIIAAKAVAFQEAMAPAFTAYQKQIAANAAALAKGLTDRGFQLVSGGTDNHLMLVDLRNKQLTGKEAEKRLDECRITVNKNAIPFDPQSPFVTSGIRIGTPAATSRGMDEAAMDQVAEAIH 384          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_DICT6 (Serine hydroxymethyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=glyA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.161e-26
Identity = 63/147 (42.86%), Postives = 87/147 (59.18%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT------LTLEIQKEYGKLLKDF 426
            H I A AVA K+A TP FK Y KQ+  NA A+   L   GY LV+GGT+NHL+L DLR  G+TG + EK  +   ITVNKNA+ F         G+RIGTPA+T+RG+ E +   +   +H  ++      +  +++KE  +L K F
Sbjct:  261 HVIAAKAVAFKEAMTPEFKEYQKQIILNAKAMAEELMRLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTVTSGIRIGTPALTTRGMKEDEMRYVARLIHEVLSNFKDSKVKEKVKKEVEELCKQF 407          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_ANATD (Serine hydroxymethyltransferase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glyA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.161e-26
Identity = 62/125 (49.60%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 378
            H I A AVALK+A T  FK Y  Q+  NA AL   L  +G+ LV+GGT+NHL+L DLR  G+TG   EK+ D  NIT NKNAV F   S +   G+R+GTPA+T+RG  E D  ++ + +H A+T
Sbjct:  264 HVIAAKAVALKEAMTEEFKNYQVQILKNAKALSTRLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKILDEHNITCNKNAVPFDTQSPMITSGIRLGTPAVTTRGFKEGDMLEVADIIHDALT 388          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_CALS8 (Serine hydroxymethyltransferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glyA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.392e-25
Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 378
            H I A AVALK+A T  F+ Y  Q+  NA AL   L  +G+ LV+GGT+NHL+L DLR  G+TG   EK  D  NIT NKNA+ F   S +   G+R+GTPA+T+RG  E+D  ++ + +H A+T
Sbjct:  266 HVIAAKAVALKEAMTEEFRNYQIQILKNAKALSERLIERGFRLVSGGTDNHLMLVDLRNKGITGKDAEKRLDSLNITCNKNAIPFDTQSPMVTSGIRLGTPAVTTRGFKEEDMIEVADIIHDALT 390          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_DICTD (Serine hydroxymethyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=glyA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.818e-25
Identity = 63/147 (42.86%), Postives = 87/147 (59.18%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT------LTLEIQKEYGKLLKDF 426
            H I A AVA K+A +P FK Y KQ+  NA A+   L   GY LV+GGT+NHL+L DLR  G+TG + EK  +   ITVNKNA+ F         G+RIGTPA+T+RG+ E +   I   +H  ++      +  +++KE  +L K F
Sbjct:  261 HVIAAKAVAFKEAMSPEFKEYQKQIVLNAKAMAEELIKLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTITSGIRIGTPALTTRGMKEDEMRYIARLIHEVLSNFKDERVKEKVKKEVEELCKQF 407          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_EXIS2 (Serine hydroxymethyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=glyA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.375e-25
Identity = 61/120 (50.83%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA  +A  P FK Y +QV ANA  LG  LT +G  +V+GGT+NHL+L DL+PLG+TG   E   D   ITVNKN + F  +S     G+RIGT AMTSRG  E + +QI E +
Sbjct:  266 HVIAAKAVAFAEALAPEFKDYIEQVVANAKVLGEELTARGLRIVSGGTDNHLLLVDLQPLGITGKLAEHALDEAGITVNKNTIPFDPASPFVTSGIRIGTAAMTSRGFKEAEMKQIAELI 385          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_PELTS (Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.101e-25
Identity = 65/139 (46.76%), Postives = 87/139 (62.59%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLK 420
            H I A AVA K+A  P FK Y +++ +NA AL + L  +G+ LV+GGT+NHL+L DLR   +TG + ++L D   +TVNKNAV F         G+RIGTPA+TSRGL E D  QI E +  A+    E + + GKL K
Sbjct:  266 HVIAAKAVAFKEAMEPGFKEYQRKIVSNARALADALLERGFELVSGGTDNHLILVDLRSKKITGREAQELFDAVGVTVNKNAVPFDPQPPNIASGIRIGTPAVTSRGLNEDDMVQIAEIMDYAI----EHRDDRGKLEK 400          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.023e-25
Identity = 54/131 (41.22%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEI 393
            HNH I  +A AL  A TP F  Y ++V  N+  L + L   G  ++TGGT+NH++L DLR  G+ G  VE +CD   I++N+NA+ G+SS L+P G+R+GT A+T+RG   ++  ++G+ +   V L  E+
Sbjct:  286 HNHTIAGIASALLHAGTPEFAEYTRRVVENSRELCSRLQSLGLDILTGGTDNHMLLVDLRSTGVDGAAVEHMCDALGISLNRNAIVGNSSPLSPSGIRVGTYAVTARGFGPEEMREVGDIIGGVVKLCREM 416          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_YEAST5.835e-3241.24Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYA_SYMTH2.997e-2852.80Serine hydroxymethyltransferase OS=Symbiobacterium... [more]
GLYA_HELMI5.112e-2853.72Serine hydroxymethyltransferase OS=Heliobacterium ... [more]
GLYA_DICT68.161e-2642.86Serine hydroxymethyltransferase OS=Dictyoglomus th... [more]
GLYA_ANATD8.161e-2649.60Serine hydroxymethyltransferase OS=Anaerocellum th... [more]
GLYA_CALS81.392e-2548.00Serine hydroxymethyltransferase OS=Caldicellulosir... [more]
GLYA_DICTD1.818e-2542.86Serine hydroxymethyltransferase OS=Dictyoglomus tu... [more]
GLYA_EXIS22.375e-2550.83Serine hydroxymethyltransferase OS=Exiguobacterium... [more]
GLYA_PELTS3.101e-2546.76Serine hydroxymethyltransferase OS=Pelotomaculum t... [more]
GLYC_ENCCU9.023e-2541.22Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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