CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_ALKOO (Serine hydroxymethyltransferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=glyA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.023e-25
Identity = 58/120 (48.33%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AV+ K+A +P FKAY +QV  NA  LG  L  +G++LV+GGT+NHL+L DLR   +TG   EKL D   +TVNKN + +   S     G+RIGTPA+T+RG+ E D   I E +
Sbjct:  263 HVIAAKAVSFKEALSPEFKAYQEQVIKNAAKLGEELKSRGFNLVSGGTDNHLLLLDLRNKNITGKDAEKLLDEVGVTVNKNTIPYDPESPFVTSGIRIGTPAVTTRGMKEDDMVTIAEII 382          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.178e-24
Identity = 58/118 (49.15%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 357
            H I A AV  K+A  P FK Y KQ+  NA AL   L  +G  +V+ GT+NHL+L DL P GLTG  +EKL D  +IT NKN +  D        G+R+GTPA TSRGL E DF+++ E
Sbjct:  265 HVIAAKAVCFKEALQPEFKEYQKQIVKNAQALCKGLQSRGIKIVSDGTDNHLMLVDLTPFGLTGKSIEKLLDAAHITANKNTIPNDPQKPFVTSGIRLGTPAATSRGLKEDDFDKVAE 382          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_CARHZ (Serine hydroxymethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=glyA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.539e-24
Identity = 58/120 (48.33%), Postives = 80/120 (66.67%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA K+A +P F+ Y +QV  NA AL   L  +G  LV+GGT+NHL+L D+RP+GLTG + E+L D   +TVNKNA+ +   S     G+RIGTPA+T+RG+ E +  +I E +
Sbjct:  265 HVIAAKAVAFKEALSPEFREYQQQVVNNAKALAEELKKQGLRLVSGGTDNHLMLVDVRPVGLTGKRAEQLLDEIGVTVNKNAIPYDPESPNVTSGIRIGTPAVTTRGMKEGEMAEIAEII 384          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SYNAS (Serine hydroxymethyltransferase OS=Syntrophus aciditrophicus (strain SB) GN=glyA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.010e-24
Identity = 61/147 (41.50%), Postives = 86/147 (58.50%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV------TLTLEIQKEYGKLLKDF 426
            H I A AVA K+A T  FK Y  Q+  NA AL   L G+GY LV+GGT+NHL+L DL   GLTG + ++  D   ITVNKN + F     +   G+RIGTPA+TSRG+ E++   I   +   +         + +++E G+L ++F
Sbjct:  261 HIIAAKAVAFKEALTDEFKDYQSQIVKNAQALAKELIGRGYRLVSGGTDNHLLLMDLTDKGLTGKEAQESLDSAGITVNKNGIPFDTRGPMVTSGIRIGTPALTSRGMKEEEMRTIARLIAEVLEHRDNEKHLMAVKEEVGRLCQNF 407          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SYNFM (Serine hydroxymethyltransferase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=glyA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 63/167 (37.72%), Postives = 91/167 (54.49%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 504
            H I A AVA ++A  P+FK Y ++V A+A AL   L   GY LV+GGT+NHL+L DL P G+TG   E+  D   ITVNKN++ F         G+RIGTPA+ +RG+L    + +  F+HR +                  K   +   +  L+A+V +F S+F +
Sbjct:  261 HVIAAKAVAFREALQPSFKEYQQRVVADAAALAQELKALGYRLVSGGTDNHLMLVDLTPQGVTGRVAEETLDKAGITVNKNSIPFDQQKPQVTSGIRIGTPALATRGILPHHMKAVAGFMHRGL------------------KSAGDEPALARLRAEVAEFCSAFPL 409          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_DEIGD (Serine hydroxymethyltransferase OS=Deinococcus geothermalis (strain DSM 11300) GN=glyA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 66/168 (39.29%), Postives = 92/168 (54.76%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMP 507
            H I A AVA  +A  P FK YA Q+  NA AL      +GY +V+GGT+NHL + DLRP GL G K  +  D  +IT++K+ + +     L  GG+RIGTPA+T+RG+ E D E++ + + RA+                  KG       E +KA+V  FA SF +P
Sbjct:  270 HVIAAKAVAFGEALQPEFKDYAAQIIRNAQALAGAFQNRGYRVVSGGTDNHLFVLDLRPQGLNGTKATRRLDANDITISKSTLPYDTEKILHGGGIRIGTPAITTRGMKEADMERVADLIDRAL------------------KG-------EDVKAEVHAFAGSFPLP 412          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.478e-24
Identity = 59/126 (46.83%), Postives = 81/126 (64.29%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 381
            H I A A A  +A  P FKAY +Q+  NA AL   L  +G++LV+GGT+NHL+L DLR  G+TG + E L D  +IT NKNA+ F         G+R+GTPA+T+RG  EKD +++ E +  A+TL
Sbjct:  263 HVIAAKAAAFGEALKPEFKAYQQQIINNAQALAKGLLERGFNLVSGGTDNHLILVDLRGTGITGKQAETLLDEVHITCNKNAIPFDPEKPFVTSGIRLGTPAVTTRGFKEKDMDKVAEII--ALTL 386          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_PELPB (Serine hydroxymethyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.639e-24
Identity = 60/125 (48.00%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 378
            H I   AVA  +A  PAF+ YA QV  NA A+    T  GY +V+GGT+NHL+L DLR   +TG   E L     ITVNKN V F D S     G+R+GTPAMT+RG+ E D   I E + R +T
Sbjct:  282 HIIAGKAVAFGEALQPAFRDYAAQVIKNAAAMAEKFTELGYKIVSGGTKNHLMLLDLRSKNVTGKVAENLLHSAGITVNKNMVPFDDKSPFVTSGIRVGTPAMTTRGMNEADSVLIAELIDRVIT 406          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPH (Serine hydroxymethyltransferase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.639e-24
Identity = 60/138 (43.48%), Postives = 86/138 (62.32%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLL 417
            H I A A+  K+A   +FK YA ++ +NA AL N LT +G++LV+GGT+NHL+L DL+ + +TG + E + D  NIT NKN V  D +S     G+R+GTPA+T+RG  EKD   + E +   V   ++  KE  K L
Sbjct:  265 HVIAAKAICFKEALDDSFKDYAGKIISNAGALANELTARGFNLVSGGTDNHLMLIDLQNMNITGKEAEHILDEANITCNKNTVPNDPASPFVTSGIRLGTPAITTRGFNEKDMAVVAEAI-SLVVKDVDKNKEQAKAL 401          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_CHLPD (Serine hydroxymethyltransferase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.639e-24
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 378
            H I   AVA  +A  P F+ YA QVK NA  + +  +  GY++V+GGT+NHL+L DLR   + G   E L     ITVNKN V F D S     G+RIGTPAMT+RG+ E D E+I E + R V+
Sbjct:  282 HIIAGKAVAFAEALRPEFRDYALQVKKNAAVMADKFSSLGYTIVSGGTKNHLMLLDLRNKNVNGKVAENLLHQAGITVNKNMVPFDDKSPFVTSGIRIGTPAMTTRGMKESDSERIVELIDRVVS 406          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_ALKOO9.023e-2548.33Serine hydroxymethyltransferase OS=Alkaliphilus or... [more]
GLYA_EUBR31.178e-2449.15Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA_CARHZ1.539e-2448.33Serine hydroxymethyltransferase OS=Carboxydothermu... [more]
GLYA_SYNAS2.010e-2441.50Serine hydroxymethyltransferase OS=Syntrophus acid... [more]
GLYA_SYNFM2.625e-2437.72Serine hydroxymethyltransferase OS=Syntrophobacter... [more]
GLYA_DEIGD2.625e-2439.29Serine hydroxymethyltransferase OS=Deinococcus geo... [more]
GLYA_DESRM4.478e-2446.83Serine hydroxymethyltransferase OS=Desulfotomaculu... [more]
GLYA_PELPB7.639e-2448.00Serine hydroxymethyltransferase OS=Pelodictyon pha... [more]
GLYA_CLOPH7.639e-2443.48Serine hydroxymethyltransferase OS=Clostridium phy... [more]
GLYA_CHLPD7.639e-2447.20Serine hydroxymethyltransferase OS=Chlorobium phae... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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