CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_PROM9 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9312) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA  +A  P F  Y++QV  NA  L + L  +G  +V+GGT+NH+VL DLR + +TG   + L    NIT NKN V F   S     G+R+GT A+T+RG  E  F ++GE +
Sbjct:  265 HIIAAKAVAFGEALQPDFVNYSQQVIKNAKVLASTLISRGIDIVSGGTDNHIVLLDLRSINMTGKIADLLVSAVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFNETAFAEVGEII 384
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_PROM5 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9515) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA  +A  P F  Y+KQV  NA  L + L  +G  +V+GGT+NH+VL DLR + +TG   + L    NIT NKN V F   S     G+R+GT A+T+RG  ++ F ++GE +
Sbjct:  265 HIIAAKAVAFGEALQPNFVNYSKQVIKNAKVLSSTLINRGIDIVSGGTDNHIVLLDLRSINMTGKVADLLVSEVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFNDEAFIEVGEII 384
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_PELUB (Serine hydroxymethyltransferase OS=Pelagibacter ubique GN=glyA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 52/147 (35.37%), Postives = 78/147 (53.06%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVN 444
            H I   A    +A  P FK Y K V ANA  L   L   G+ + +GGT+ HL+L DLRP  + GN   +     NIT NKN + F     +   G+R+GT A T+RG   K+FE++GE + + V    E  ++ GK+ ++    +++
Sbjct:  278 HVIAGKAAGFLEALRPDFKDYIKSVLANAKILSETLKNNGFKIYSGGTDTHLMLVDLRPFNVKGNAAAESLSNANITCNKNGIPFDSEKPMITSGIRLGTQAATTRGFGLKEFEKVGELITKVVKGLSENPEDNGKIEEEVRNEVID 424
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_LISMH (Serine hydroxymethyltransferase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 54/125 (43.20%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG----EFLH 366
            H I A AVA  +A  P F AY +Q+  N+  L   L     +++TGG++NHL+L DL+PLGLTG   EK+ D   ITVNKN + F   S     G+R+G  A+T+RG  E   E++G    E LH
Sbjct:  261 HVIAAKAVAFGEALQPEFTAYCEQIIRNSKKLAETLQANDVAVLTGGSDNHLLLIDLKPLGLTGKAAEKVLDEVGITVNKNTIPFETESPFVTSGIRVGVAAVTTRGFDEVAIEKVGVLISEVLH 385
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_LISMF (Serine hydroxymethyltransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 54/125 (43.20%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG----EFLH 366
            H I A AVA  +A  P F AY +Q+  N+  L   L     +++TGG++NHL+L DL+PLGLTG   EK+ D   ITVNKN + F   S     G+R+G  A+T+RG  E   E++G    E LH
Sbjct:  261 HVIAAKAVAFGEALQPEFTAYCEQIIRNSKKLAETLQANDVAVLTGGSDNHLLLIDLKPLGLTGKAAEKVLDEVGITVNKNTIPFETESPFVTSGIRVGVAAVTTRGFDEVAIEKVGVLISEVLH 385
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_LISMC (Serine hydroxymethyltransferase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 54/125 (43.20%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG----EFLH 366
            H I A AVA  +A  P F AY +Q+  N+  L   L     +++TGG++NHL+L DL+PLGLTG   EK+ D   ITVNKN + F   S     G+R+G  A+T+RG  E   E++G    E LH
Sbjct:  261 HVIAAKAVAFGEALQPEFTAYCEQIIRNSKKLAETLQANDVAVLTGGSDNHLLLIDLKPLGLTGKAAEKVLDEVGITVNKNTIPFETESPFVTSGIRVGVAAVTTRGFDEVAIEKVGVLISEVLH 385
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_LISIN (Serine hydroxymethyltransferase OS=Listeria innocua GN=glyA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 54/125 (43.20%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG----EFLH 366
            H I A AVA  +A  P F AY +Q+  N+  L   L     +++TGG++NHL+L DL+PLGLTG   EK+ D   ITVNKN + F   S     G+R+G  A+T+RG  E   E++G    E LH
Sbjct:  261 HVIAAKAVAFGEALQPEFTAYCEQIIRNSKKLAETLQANDVAVLTGGSDNHLLLIDLKPLGLTGKAAEKVLDEVGITVNKNTIPFETESPFVTSGIRVGVAAVTTRGFDEVAIEKVGVLISEVLH 385
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_ECO5E (Serine hydroxymethyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVALK+A  P FK Y +QV  NA A+      +GY +V+GGT+NHL L DL    LTG + +      NITVNKN+V  D  S     G+R+GTPA+T RG  E + +++  ++
Sbjct:  267 HVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEVEAKELAGWM 386
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_ECO57 (Serine hydroxymethyltransferase OS=Escherichia coli O157:H7 GN=glyA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVALK+A  P FK Y +QV  NA A+      +GY +V+GGT+NHL L DL    LTG + +      NITVNKN+V  D  S     G+R+GTPA+T RG  E + +++  ++
Sbjct:  267 HVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEVEAKELAGWM 386
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_CYTH3 (Serine hydroxymethyltransferase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=glyA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA ++A +  +  YAKQ++ NA  +      KGY +++GGT+NHL+L DLR   LTG + E      +IT+NKN V F D S     G+R+GT A+TSRG++  D  +I E +
Sbjct:  281 HVIAAKAVAFQEALSTDYLQYAKQIQKNAQIMAEAFLKKGYDIISGGTDNHLMLIDLRSKNLTGKEAENALIRADITINKNMVPFDDKSPFVTSGMRVGTAAITSRGMVGDDMIRIVEMI 400
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PROM96.692e-2043.33Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_PROM56.692e-2043.33Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_PELUB6.692e-2035.37Serine hydroxymethyltransferase OS=Pelagibacter ub... [more]
GLYA_LISMH6.692e-2043.20Serine hydroxymethyltransferase OS=Listeria monocy... [more]
GLYA_LISMF6.692e-2043.20Serine hydroxymethyltransferase OS=Listeria monocy... [more]
GLYA_LISMC6.692e-2043.20Serine hydroxymethyltransferase OS=Listeria monocy... [more]
GLYA_LISIN6.692e-2043.20Serine hydroxymethyltransferase OS=Listeria innocu... [more]
GLYA_ECO5E6.692e-2043.33Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECO576.692e-2043.33Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_CYTH36.692e-2042.50Serine hydroxymethyltransferase OS=Cytophaga hutch... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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