CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_BUCAP (Serine hydroxymethyltransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=glyA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 53/120 (44.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A A+A K+A  PAFK Y KQV  NA  +      K Y +V+G T NHL L DL    +TG + +     CNITVNKN +  D  S     G+RIGTPA+T RG  E +  QI +++
Sbjct:  267 HVIAAKAIAFKEALEPAFKIYQKQVIKNAQVMVQSFLKKDYQIVSGNTFNHLFLLDLTSKNITGQEADIALGKCNITVNKNTIPNDLRSPFITSGIRIGTPAVTKRGFKENEMLQISDWI 386          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_BACSU (Serine hydroxymethyltransferase OS=Bacillus subtilis GN=glyA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 57/137 (41.61%), Postives = 77/137 (56.20%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 414
            H I A AV+  +     FK YA+ V +NA  L   LT +G  LV+GGT+NHL+L DLR LGLTG   E + D   IT NKNA+ +         G+R+GT A+TSRG      E++G      + L L+  ++ GKL
Sbjct:  261 HVIAAKAVSFGEVLQDDFKTYAQNVISNAKRLAEALTKEGIQLVSGGTDNHLILVDLRSLGLTGKVAEHVLDEIGITSNKNAIPYDPEKPFVTSGIRLGTAAVTSRGFDGDALEEVGAI----IALALKNHEDEGKL 393          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA1_SULDN (Serine hydroxymethyltransferase 1 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 63/165 (38.18%), Postives = 86/165 (52.12%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSF 498
            H I A AV  K   +  +K YA QVKANA  LG  L  +GY LV+GGT+NHLVL        +G   +       ITVNKN V G++ S     G+RIG+PA+TSRG+ E++FE I                +   +L D N    N K  E++K ++++ A  F
Sbjct:  261 HVIAAKAVGFKYNLSAEWKDYAVQVKANAKILGEVLVKRGYDLVSGGTDNHLVLLSFLNRDFSGKDADIALGNAGITVNKNTVPGETRSPFVTSGIRIGSPALTSRGMKEREFEFIA--------------NKIADVLDDIN----NTKLQESVKKELKELAQKF 407          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA1_RHIME (Serine hydroxymethyltransferase 1 OS=Rhizobium meliloti GN=glyA1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 52/120 (43.33%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVAL +A  P+FK YA QV  NA  L   L   G  +V+GGT+NHL+L DLR    TG + E       +T NKN + F         GVR+G PA T+RG  E +F+++GE +
Sbjct:  272 HVIAAKAVALGEALQPSFKDYAAQVVKNARTLAETLKANGLDIVSGGTDNHLMLVDLRKKNATGKRAEAALGRAYVTCNKNGIPFDPEKPFVTSGVRLGAPAGTTRGFKEAEFKEVGELI 391          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_XYLFT (Serine hydroxymethyltransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 54/120 (45.00%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA K+A  PAFK Y +QV  NA A+   L  +GY +V+GGTENHL+L D+    ++G   E      +ITVNKNAV  D  S     G+R+GTPA+T+RG  E+D   +  ++
Sbjct:  267 HVIAAKAVAFKEALEPAFKVYQQQVVKNAKAMAGTLMLRGYKIVSGGTENHLMLVDMIGRDVSGKDAEGALGQVHITVNKNAVPDDPRSPFVTSGLRLGTPAVTTRGYQEQDCVDLAHWI 386          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_XYLF2 (Serine hydroxymethyltransferase OS=Xylella fastidiosa (strain M23) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 54/120 (45.00%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA K+A  PAFK Y +QV  NA A+   L  +GY +V+GGTENHL+L D+    ++G   E      +ITVNKNAV  D  S     G+R+GTPA+T+RG  E+D   +  ++
Sbjct:  267 HVIAAKAVAFKEALEPAFKVYQQQVVKNAKAMAGTLMLRGYKIVSGGTENHLMLVDMIGRDVSGKDAEGALGQVHITVNKNAVPDDPRSPFVTSGLRLGTPAVTTRGYQEQDCVDLAHWI 386          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_STAAW (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain MW2) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 414
            H I A AVA  +A    FK Y +QV  NA  L   L  +G+ +V+GGT+NHLV  D++  +GLTG + E+  D   IT NKN + F         G+R+GTPA T+RG  EK FE++     + ++L L+  K+  KL
Sbjct:  261 HVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVA----KIISLALKNSKDEEKL 394          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_STAAT (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 414
            H I A AVA  +A    FK Y +QV  NA  L   L  +G+ +V+GGT+NHLV  D++  +GLTG + E+  D   IT NKN + F         G+R+GTPA T+RG  EK FE++     + ++L L+  K+  KL
Sbjct:  261 HVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVA----KIISLALKNSKDEEKL 394          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_STAAS (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 414
            H I A AVA  +A    FK Y +QV  NA  L   L  +G+ +V+GGT+NHLV  D++  +GLTG + E+  D   IT NKN + F         G+R+GTPA T+RG  EK FE++     + ++L L+  K+  KL
Sbjct:  261 HVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVA----KIISLALKNSKDEEKL 394          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_STAAR (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 414
            H I A AVA  +A    FK Y +QV  NA  L   L  +G+ +V+GGT+NHLV  D++  +GLTG + E+  D   IT NKN + F         G+R+GTPA T+RG  EK FE++     + ++L L+  K+  KL
Sbjct:  261 HVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVA----KIISLALKNSKDEEKL 394          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_BUCAP6.692e-2044.17Serine hydroxymethyltransferase OS=Buchnera aphidi... [more]
GLYA_BACSU6.692e-2041.61Serine hydroxymethyltransferase OS=Bacillus subtil... [more]
GLYA1_SULDN6.692e-2038.18Serine hydroxymethyltransferase 1 OS=Sulfurimonas ... [more]
GLYA1_RHIME6.692e-2043.33Serine hydroxymethyltransferase 1 OS=Rhizobium mel... [more]
GLYA_XYLFT8.740e-2045.00Serine hydroxymethyltransferase OS=Xylella fastidi... [more]
GLYA_XYLF28.740e-2045.00Serine hydroxymethyltransferase OS=Xylella fastidi... [more]
GLYA_STAAW8.740e-2040.58Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAAT8.740e-2040.58Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAAS8.740e-2040.58Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAAR8.740e-2040.58Serine hydroxymethyltransferase OS=Staphylococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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