CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_STAAN (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain N315) GN=glyA PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 414
            H I A AVA  +A    FK Y +QV  NA  L   L  +G+ +V+GGT+NHLV  D++  +GLTG + E+  D   IT NKN + F         G+R+GTPA T+RG  EK FE++     + ++L L+  K+  KL
Sbjct:  261 HVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVA----KIISLALKNSKDEEKL 394
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_STAAM (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=glyA PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 414
            H I A AVA  +A    FK Y +QV  NA  L   L  +G+ +V+GGT+NHLV  D++  +GLTG + E+  D   IT NKN + F         G+R+GTPA T+RG  EK FE++     + ++L L+  K+  KL
Sbjct:  261 HVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVA----KIISLALKNSKDEEKL 394
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_STAAE (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain Newman) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 414
            H I A AVA  +A    FK Y +QV  NA  L   L  +G+ +V+GGT+NHLV  D++  +GLTG + E+  D   IT NKN + F         G+R+GTPA T+RG  EK FE++     + ++L L+  K+  KL
Sbjct:  261 HVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVA----KIISLALKNSKDEEKL 394
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_STAAC (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain COL) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 414
            H I A AVA  +A    FK Y +QV  NA  L   L  +G+ +V+GGT+NHLV  D++  +GLTG + E+  D   IT NKN + F         G+R+GTPA T+RG  EK FE++     + ++L L+  K+  KL
Sbjct:  261 HVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVA----KIISLALKNSKDEEKL 394
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_STAAB (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 414
            H I A AVA  +A    FK Y +QV  NA  L   L  +G+ +V+GGT+NHLV  D++  +GLTG + E+  D   IT NKN + F         G+R+GTPA T+RG  EK FE++     + ++L L+  K+  KL
Sbjct:  261 HVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVA----KIISLALKNSKDEEKL 394
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_STAA9 (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain JH9) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 414
            H I A AVA  +A    FK Y +QV  NA  L   L  +G+ +V+GGT+NHLV  D++  +GLTG + E+  D   IT NKN + F         G+R+GTPA T+RG  EK FE++     + ++L L+  K+  KL
Sbjct:  261 HVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVA----KIISLALKNSKDEEKL 394
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_STAA8 (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain NCTC 8325) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 414
            H I A AVA  +A    FK Y +QV  NA  L   L  +G+ +V+GGT+NHLV  D++  +GLTG + E+  D   IT NKN + F         G+R+GTPA T+RG  EK FE++     + ++L L+  K+  KL
Sbjct:  261 HVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVA----KIISLALKNSKDEEKL 394
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_STAA3 (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain USA300) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 414
            H I A AVA  +A    FK Y +QV  NA  L   L  +G+ +V+GGT+NHLV  D++  +GLTG + E+  D   IT NKN + F         G+R+GTPA T+RG  EK FE++     + ++L L+  K+  KL
Sbjct:  261 HVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVA----KIISLALKNSKDEEKL 394
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_STAA2 (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain JH1) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 414
            H I A AVA  +A    FK Y +QV  NA  L   L  +G+ +V+GGT+NHLV  D++  +GLTG + E+  D   IT NKN + F         G+R+GTPA T+RG  EK FE++     + ++L L+  K+  KL
Sbjct:  261 HVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVA----KIISLALKNSKDEEKL 394
[Close]
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_STAA1 (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 1 
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 414
            H I A AVA  +A    FK Y +QV  NA  L   L  +G+ +V+GGT+NHLV  D++  +GLTG + E+  D   IT NKN + F         G+R+GTPA T+RG  EK FE++     + ++L L+  K+  KL
Sbjct:  261 HVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVA----KIISLALKNSKDEEKL 394
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_STAAN8.740e-2040.58Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAAM8.740e-2040.58Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAAE8.740e-2040.58Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAAC8.740e-2040.58Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAAB8.740e-2040.58Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAA98.740e-2040.58Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAA88.740e-2040.58Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAA38.740e-2040.58Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAA28.740e-2040.58Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAA18.740e-2040.58Serine hydroxymethyltransferase OS=Staphylococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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