CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_RHOCS (Serine hydroxymethyltransferase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 53/120 (44.17%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA  +A  P FKAYA+ V  NA  L + L   G  +V+GGT++H+VL DLRP  LTG   E   +   +T NKN V F     L   GVR+G+PA T+RG    +F Q+G+ +
Sbjct:  272 HVIAAKAVAFGEALRPEFKAYAQAVVDNARVLADRLVAGGLDIVSGGTDSHIVLVDLRPKRLTGKAAEATLEHAGMTCNKNGVPFDPEKPLVTSGVRLGSPAATTRGFGTAEFAQVGDLI 391          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_PROM0 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9301) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA  +A  P F  Y++QV  NA  L + L  +G  +V+GGT+NH+VL DLR + +TG   + L    NIT NKN V F   S     G+R+GT A+T+RG  E  F ++GE +
Sbjct:  265 HIIAAKAVAFGEALQPDFVNYSQQVIKNAKVLASTLINRGIDIVSGGTDNHIVLLDLRSINMTGKIADLLVSEVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFNENAFAEVGEII 384          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_TOLAT (Serine hydroxymethyltransferase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 51/120 (42.50%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVA K+A  P FKAY +QV  N+ A+      +GY +V+GGTENHL L D     LTG + +    L NITVNKN+V  D  S     G+RIG+P++T RG  E + +++  ++
Sbjct:  267 HVIAGKAVAFKEAMEPEFKAYQQQVVKNSKAMVEVFLARGYKIVSGGTENHLFLVDFTDRELTGKEADAALGLANITVNKNSVPNDPRSPFVTSGIRIGSPSITRRGFKEAEAKELAGWI 386          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_THERP (Serine hydroxymethyltransferase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRG 324
            H I   AVAL +A  P F+ Y ++V  NA  L   L  +G+ LV+GGT+NHL+L DLR  GL+G K E++ D   ITVNKN +  D        G+R+GTPAMT+RG
Sbjct:  262 HVIAGKAVALGEALRPTFRTYIERVLENARVLAETLQAEGFRLVSGGTDNHLLLVDLRSHGLSGRKAERVLDEVGITVNKNTIPNDPKPPTQASGIRLGTPAMTTRG 368          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_RALPJ (Serine hydroxymethyltransferase OS=Ralstonia pickettii (strain 12J) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVA K+A +P FKAY +QV  NA A+   L  +G  +V+G TE+H++L DLR   +TG + EK+    +ITVNKNA+  D        GVR+G+PAMT+RG  E +  ++   +
Sbjct:  265 HVIAGKAVAFKEALSPEFKAYQEQVVKNAAAMAETLMARGLRIVSGRTESHVMLVDLRAKKITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGVRLGSPAMTTRGFKEAEAVKVAHLI 384          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_NEIGO (Serine hydroxymethyltransferase OS=Neisseria gonorrhoeae GN=glyA PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 52/112 (46.43%), Postives = 67/112 (59.82%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 339
            H I A AVA K+A  P FK YAKQVK NA  +   L  +G  +V+G TE+H+ L DL+P+ +TG   E      +ITVNKNA+  D        G+RIG+ AMT+RG  E D
Sbjct:  265 HVIAAKAVAFKEALQPEFKQYAKQVKINAAVMAEELVKRGLRIVSGRTESHVFLVDLQPMKITGKAAEAALGKAHITVNKNAIPNDPEKPFVTSGIRIGSAAMTTRGFNETD 376          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_NEIG2 (Serine hydroxymethyltransferase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 52/112 (46.43%), Postives = 67/112 (59.82%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 339
            H I A AVA K+A  P FK YAKQVK NA  +   L  +G  +V+G TE+H+ L DL+P+ +TG   E      +ITVNKNA+  D        G+RIG+ AMT+RG  E D
Sbjct:  265 HVIAAKAVAFKEALQPEFKQYAKQVKINAAVMAEELVKRGLRIVSGRTESHVFLVDLQPMKITGKAAEAALGKAHITVNKNAIPNDPEKPFVTSGIRIGSAAMTTRGFNETD 376          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_NEIG1 (Serine hydroxymethyltransferase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 52/112 (46.43%), Postives = 67/112 (59.82%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 339
            H I A AVA K+A  P FK YAKQVK NA  +   L  +G  +V+G TE+H+ L DL+P+ +TG   E      +ITVNKNA+  D        G+RIG+ AMT+RG  E D
Sbjct:  265 HVIAAKAVAFKEALQPEFKQYAKQVKINAAVMAEELVKRGLRIVSGRTESHVFLVDLQPMKITGKAAEAALGKAHITVNKNAIPNDPEKPFVTSGIRIGSAAMTTRGFNETD 376          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_HAES1 (Serine hydroxymethyltransferase OS=Haemophilus somnus (strain 129Pt) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 53/120 (44.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AV  K+A  P FK Y  QV  NA A+      +GY++V+ GTENHL L DL   GLTG   +      NITVNKNAV  D        G+R+GTPA+T RG  E+D  ++  ++
Sbjct:  266 HVIAAKAVCFKEALEPEFKTYQAQVVKNAKAMVEVFKQRGYNVVSNGTENHLFLVDLVSHGLTGKAADAALSRANITVNKNAVPNDPQKPFVTSGIRVGTPAVTRRGFNEEDVAELAGWM 385          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_EDWI9 (Serine hydroxymethyltransferase OS=Edwardsiella ictaluri (strain 93-146) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 53/120 (44.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVALK+A  P F  Y +QV  NA A+ +    +GY +V+GGTENHL L DL    +TG + +      NITVNKN+V  D  S     G+RIGTPA+T RG  E +  ++  ++
Sbjct:  267 HVIAAKAVALKEAMEPEFTRYQQQVAKNAKAMVDVFLQRGYKVVSGGTENHLFLLDLVDRQITGKEADAALGHANITVNKNSVPNDPQSPFVTSGIRIGTPAITRRGFKEAESRELAGWM 386          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_RHOCS8.740e-2044.17Serine hydroxymethyltransferase OS=Rhodospirillum ... [more]
GLYA_PROM08.740e-2043.33Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_TOLAT1.141e-1942.50Serine hydroxymethyltransferase OS=Tolumonas auens... [more]
GLYA_THERP1.141e-1947.66Serine hydroxymethyltransferase OS=Thermomicrobium... [more]
GLYA_RALPJ1.141e-1942.50Serine hydroxymethyltransferase OS=Ralstonia picke... [more]
GLYA_NEIGO1.141e-1946.43Serine hydroxymethyltransferase OS=Neisseria gonor... [more]
GLYA_NEIG21.141e-1946.43Serine hydroxymethyltransferase OS=Neisseria gonor... [more]
GLYA_NEIG11.141e-1946.43Serine hydroxymethyltransferase OS=Neisseria gonor... [more]
GLYA_HAES11.141e-1944.17Serine hydroxymethyltransferase OS=Haemophilus som... [more]
GLYA_EDWI91.141e-1944.17Serine hydroxymethyltransferase OS=Edwardsiella ic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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