CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_BARQU (Serine hydroxymethyltransferase OS=Bartonella quintana GN=glyA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 51/120 (42.50%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA ++A  PAFK Y+  V  NA  L   L   G+ +V+GGT+NHL+L DL    +TG + E      +IT NKNA+ F   +     G+R+G+PA T+RGL E +F Q+G  +
Sbjct:  275 HVIAAKAVAFEEALQPAFKNYSANVVVNAKTLAKTLQSNGFDIVSGGTDNHLLLVDLCSKKVTGKRAELALGRAHITCNKNAIPFDLQAPSVTSGIRLGSPAATTRGLAENEFVQVGHMI 394          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_BACLD (Serine hydroxymethyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=glyA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 57/137 (41.61%), Postives = 77/137 (56.20%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 414
            H I A AV+  +A    FK YA+ V  NA  L   L  +G  LV+GGT+NHLVL DLR LG+TG   E + D   ITVNKNA+ +         G+R+GT A+TSRG   +  E++G      + L L+  ++  KL
Sbjct:  261 HVIAAKAVSFGEALKDEFKTYAQNVINNAKRLAETLKKEGIELVSGGTDNHLVLVDLRSLGITGKVAENVLDEVGITVNKNAIPYDPEKPFVTSGIRVGTAAVTSRGFDLEAIEEVGAI----IALALKNHEDEAKL 393          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA1_RALSO (Serine hydroxymethyltransferase 1 OS=Ralstonia solanacearum GN=glyA1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 50/120 (41.67%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVA K+A +P FKAY +QV  NA A+   L  +G  +V+G TE+H++L DLR   +TG + EK+    +ITVNKNA+  D        G+R+G+PAMT+RG  E +  ++   +
Sbjct:  265 HVIAGKAVAFKEAQSPTFKAYQEQVVKNARAMAETLMARGLRIVSGRTESHVMLVDLRAKSITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKEGEAVKVAHLI 384          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA1_HAHCH (Serine hydroxymethyltransferase 1 OS=Hahella chejuensis (strain KCTC 2396) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA K+A  PAF+ Y +QV  NA A+ + +  +GY +V+GGT+NHL L DL   G+TG   +       ITVNKN V  D  S     G+RIGTP +T+RG  EK+  ++  ++
Sbjct:  267 HVIAAKAVAFKEALEPAFRDYQQQVVNNARAMADAVKARGYKVVSGGTDNHLFLIDLIDKGVTGKDADAALGRAYITVNKNTVPNDPQSPFVTSGLRIGTPGVTTRGFKEKEVVELANWI 386          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA1_BURS3 (Serine hydroxymethyltransferase 1 OS=Burkholderia sp. (strain 383) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 53/120 (44.17%), Postives = 66/120 (55.00%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVA  +     FK Y   V ANA ALG  L   G  LVTGGT+NHL+L DLRP GL G  VE+  +   IT NKN + F         G+R+GTPA T+RG    +F ++G  +
Sbjct:  270 HVIAGKAVAFGEVLQADFKTYIDNVLANAQALGEVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAPVEQALERAGITCNKNGIPFDTEKPTVTSGIRLGTPAGTTRGFGVAEFREVGRLI 389          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_PROMH (Serine hydroxymethyltransferase OS=Proteus mirabilis (strain HI4320) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.491e-19
Identity = 52/120 (43.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVALK+A  P FK Y +QV  NA A+ +    +GY +V+GGTENHL L DL    +TG   +      NITVNKN+V  D  S     G+RIG+PA+T RG  E + + +  ++
Sbjct:  267 HVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVDVFLARGYKVVSGGTENHLFLLDLVDKDITGKDADAALGRANITVNKNSVPNDPRSPFVTSGIRIGSPAITRRGFKEAEAKDLAGWM 386          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_PELPD (Serine hydroxymethyltransferase OS=Pelobacter propionicus (strain DSM 2379) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.491e-19
Identity = 54/124 (43.55%), Postives = 68/124 (54.84%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 375
            H I A AVA K+A  P FK Y +QV  NA  L   L  +G+ L +GGT+NHL+L D     +TG   E+  D   IT NKN V F   S     G+RIGTPA T+ GL E +   +  F+  AV
Sbjct:  261 HVIAAKAVAFKEALQPEFKQYQQQVVNNARTLAEELVKRGFKLTSGGTDNHLMLLDFSGTEITGKAAEEALDKAGITANKNTVPFETRSPFVTSGIRIGTPAATTHGLKEAEMVLVAGFIADAV 384          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_HAES2 (Serine hydroxymethyltransferase OS=Haemophilus somnus (strain 2336) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.491e-19
Identity = 53/120 (44.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AV  K+A  P FK Y  QV  NA A+      +GY++V+ GTENHL L DL   GLTG   +      NITVNKNAV  D        G+R+GTPA+T RG  E+D  ++  ++
Sbjct:  266 HVIAAKAVCFKEALEPEFKTYQAQVVKNAKAMVKVFKQRGYNVVSNGTENHLFLVDLVNHGLTGKAADAALSRANITVNKNAVPNDPQKPFVTSGIRVGTPAVTRRGFNEEDVAELAGWM 385          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_FRAP2 (Serine hydroxymethyltransferase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.491e-19
Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA K+A  P+F  Y KQV  NA A+   L  +  ++++GGT NHL+L D+   G +G + E      NITVNKN++  D  S     G+RIG+PA+T+RG  E + EQI  +L
Sbjct:  267 HVIAAKAVAFKEALEPSFIDYQKQVLINAKAMEKVLKERNINIISGGTNNHLLLLDITNTGFSGKEAEAALGRANITVNKNSIPNDPRSPFVTSGLRIGSPAITTRGFKEAECEQIANWL 386          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_WOLPM (Serine hydroxymethyltransferase OS=Wolbachia pipientis wMel GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 64/168 (38.10%), Postives = 88/168 (52.38%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLV--NNKDIE-ALKADVEKFASSF 498
            H I A AVA K+A  P FK Y+K+V  NA  L   L   G  ++TGGT++H+VL DLR   LTG  V    +   IT NKN+V F  +      G+R GT A T+RGL  ++F                  KE   L+ +  +GL+  N+  +E A+KA VE+  S+F
Sbjct:  273 HVIAAKAVAFKEALAPEFKTYSKKVVENAKVLAQELQKHGLDIITGGTDSHIVLVDLRSQKLTGKDVVDSLERAGITCNKNSVPFDTAKPTITSGLRFGTAAETTRGLEAENF------------------KEIAGLINEVIQGLISGNSSSVEKAVKAKVERICSNF 422          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_BARQU1.141e-1942.50Serine hydroxymethyltransferase OS=Bartonella quin... [more]
GLYA_BACLD1.141e-1941.61Serine hydroxymethyltransferase OS=Bacillus lichen... [more]
GLYA1_RALSO1.141e-1941.67Serine hydroxymethyltransferase 1 OS=Ralstonia sol... [more]
GLYA1_HAHCH1.141e-1943.33Serine hydroxymethyltransferase 1 OS=Hahella cheju... [more]
GLYA1_BURS31.141e-1944.17Serine hydroxymethyltransferase 1 OS=Burkholderia ... [more]
GLYA_PROMH1.491e-1943.33Serine hydroxymethyltransferase OS=Proteus mirabil... [more]
GLYA_PELPD1.491e-1943.55Serine hydroxymethyltransferase OS=Pelobacter prop... [more]
GLYA_HAES21.491e-1944.17Serine hydroxymethyltransferase OS=Haemophilus som... [more]
GLYA_FRAP21.491e-1943.33Serine hydroxymethyltransferase OS=Francisella phi... [more]
GLYA_WOLPM1.947e-1938.10Serine hydroxymethyltransferase OS=Wolbachia pipie... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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