CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SHEPC (Serine hydroxymethyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 351
            H I   AVA K+A  P FK Y +QV  NA A+      +GY +V+GGT NHL+L DL    LTG + +      NITVNKN+V  D  S     GVRIGTPA+T RG  E + +Q+
Sbjct:  267 HVIAGKAVAFKEALEPEFKVYQQQVVNNAKAMVEVFLERGYKIVSGGTSNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGVRIGTPAITRRGFKEAEAKQL 382          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SHEON (Serine hydroxymethyltransferase OS=Shewanella oneidensis GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 351
            H I   AVA K+A  P FK Y +QV  NA A+      +GY +V+GGT NHL+L DL    LTG + +      NITVNKN+V  D  S     GVRIGTPA+T RG  E + +Q+
Sbjct:  267 HVIAGKAVAFKEALEPEFKTYQQQVVNNAKAMVEVFLERGYKIVSGGTSNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGVRIGTPAITRRGFKEAEAKQL 382          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SHEFN (Serine hydroxymethyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 52/116 (44.83%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 351
            H I   AVA K+A  P FK Y +QV  NA A+      +GY +V+GGTENHL+L DL    LTG + +      NITVNKN+V  D  S     G+RIG+PA+T RG  E + +++
Sbjct:  267 HVIAGKAVAFKEALEPEFKVYQQQVVKNAKAMVEVFLARGYKIVSGGTENHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGIRIGSPAITRRGFKEAEAKEL 382          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SHEAM (Serine hydroxymethyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 52/120 (43.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVA K+A  P FK Y +QV  NA A+      +GY +V+GGT+NHL+L DL    LTG + +      NITVNKN+V  D  S     G+RIGTPA+T RG  E +  ++  ++
Sbjct:  267 HVIAGKAVAFKEALEPEFKVYQQQVVTNAKAMVEVFLERGYKIVSGGTDNHLMLVDLIGRDLTGKEADAALGAANITVNKNSVPNDPRSPFITSGIRIGTPAITRRGFKEAEARELTHWI 386          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_PROMP (Serine hydroxymethyltransferase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA  +A  P F  Y+KQV  NA  L + L  +G  +V+GGT+NH+VL DLR + +TG   + L    NIT NKN V F   S     G+R+GT A+T+RG  +  F ++GE +
Sbjct:  265 HIIAAKAVAFGEALKPNFVNYSKQVINNAKVLSSTLIKRGIDIVSGGTDNHIVLLDLRSINMTGKVADLLVSEVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFNDDAFVEVGEII 384          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_PHOLL (Serine hydroxymethyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 53/120 (44.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVALK+A  P FKAY  QV  NA A+      +GY +V+G TENHL L DL    +TG   +      NITVNKN+V  D  S     GVRIGTPA+T RG  + +  ++  ++
Sbjct:  267 HVIAGKAVALKEAMEPEFKAYQHQVADNAKAMVEVFLARGYKVVSGSTENHLFLLDLVDKNITGKDADAALGRANITVNKNSVPNDPKSPFVTSGVRIGTPAITRRGFKQAEARELAGWM 386          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_NITEU (Serine hydroxymethyltransferase OS=Nitrosomonas europaea GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA K+AS+ AFK Y KQV  NA  +   L  +G  +V+G T+ H+ L DLR   LTG + E   +  +ITVNKNA+  D        G+RIGTPA+T+RG  E + E++   +
Sbjct:  265 HVIAAKAVAFKEASSQAFKDYQKQVIENARVMARVLQQRGLRIVSGRTDCHMFLVDLRAKNLTGREAESALEAAHITVNKNAIPNDPQKPFVTSGIRIGTPAITTRGFKEPESEELANLV 384          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_LISMO (Serine hydroxymethyltransferase OS=Listeria monocytogenes GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 53/125 (42.40%), Postives = 72/125 (57.60%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG----EFLH 366
            H I A AVA  +A  P F  Y +Q+  N+  L   L     +++TGG++NHL+L DL+PLGLTG   EK+ D   ITVNKN + F   S     G+R+G  A+T+RG  E   E++G    E LH
Sbjct:  261 HVIAAKAVAFGEALQPEFTTYCEQIIRNSKKLAETLQANDVAVLTGGSDNHLLLIDLKPLGLTGKAAEKVLDEVGITVNKNTIPFETESPFVTSGIRVGVAAVTTRGFDEVAIEKVGVLISEVLH 385          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_ERWT9 (Serine hydroxymethyltransferase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 51/120 (42.50%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVA K+A  P FK Y +QV  NA A+      +GY++V+GGT NHL L DL    LTG + +      NITVNKN+V  D  S     G+RIG+PA+T RG  E +  ++  ++
Sbjct:  267 HVIAGKAVAFKEAMEPEFKTYQQQVAKNAKAMVEVFLARGYNVVSGGTHNHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVRELAGWI 386          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB8 (Serine hydroxymethyltransferase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 50/124 (40.32%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 375
            H I A AV  K+A  P+FK Y + V  N   L   L  +G+ +V+GGT+NH+ L DL    +TG + E L D   ITVNKN V  ++ S     G+RIGT A+T+RG ++ D  +I   +  A+
Sbjct:  263 HIIAAKAVCFKEALDPSFKTYGENVVENCKELAEQLIARGFKIVSGGTDNHVFLVDLNNKDITGKEAEALLDSVGITVNKNTVPNETRSPFVTSGIRIGTAAITTRGFVKDDMAEIAAVISEAI 386          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_SHEPC1.947e-1946.55Serine hydroxymethyltransferase OS=Shewanella putr... [more]
GLYA_SHEON1.947e-1946.55Serine hydroxymethyltransferase OS=Shewanella onei... [more]
GLYA_SHEFN1.947e-1944.83Serine hydroxymethyltransferase OS=Shewanella frig... [more]
GLYA_SHEAM1.947e-1943.33Serine hydroxymethyltransferase OS=Shewanella amaz... [more]
GLYA_PROMP1.947e-1943.33Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_PHOLL1.947e-1944.17Serine hydroxymethyltransferase OS=Photorhabdus lu... [more]
GLYA_NITEU1.947e-1943.33Serine hydroxymethyltransferase OS=Nitrosomonas eu... [more]
GLYA_LISMO1.947e-1942.40Serine hydroxymethyltransferase OS=Listeria monocy... [more]
GLYA_ERWT91.947e-1942.50Serine hydroxymethyltransferase OS=Erwinia tasmani... [more]
GLYA_CLOB81.947e-1940.32Serine hydroxymethyltransferase OS=Clostridium bei... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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