CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_BDEBA (Serine hydroxymethyltransferase OS=Bdellovibrio bacteriovorus GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 57/147 (38.78%), Postives = 80/147 (54.42%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT------LTLEIQKEYGKLLKDF 426
            H I   AVA  +A  P FK Y+ +V +NA  L   L   G+ LVTGGT+NHL+L DL    +TG   E   D   ITVNKN V  +  S     GVRIGTPA+T+RG+   + +QI +++ + +       +   + +E  +L K F
Sbjct:  266 HVIAGKAVAFGEALKPEFKDYSGKVVSNAKVLAEELLSAGFKLVTGGTDNHLILVDLSDREITGKLAENSLDEAGITVNKNTVPNEKRSPFVTSGVRIGTPALTTRGMGPAEMKQIAKWIGQVLNNAEDAGVKNRVHEEVKELCKQF 412          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_BAUCH (Serine hydroxymethyltransferase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=glyA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 50/120 (41.67%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   A+ALK+A  P FK Y  QV  NA  + N    + +++V+GGT+NHL L DL    +TG + +      NITVNKN +  D  S+    G+RIGTPA+T RG  E D  Q+  ++
Sbjct:  267 HVIAGKAIALKEAMEPEFKIYQHQVVKNAKTMVNVFLNRNFNVVSGGTDNHLFLLDLVDKNITGQEADAALSYTNITVNKNIIPNDPQSSFVTSGIRIGTPAITRRGFNETDAYQLANWI 386          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA1_AGRT5 (Serine hydroxymethyltransferase 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glyA1 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 54/120 (45.00%), Postives = 67/120 (55.83%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA  +A  P FK YA QV  NA AL   L   G  +V+GGT+NHL+L DLR    TG + E       IT NKN + F         GVR+GTPA T+RG  E +F +IG+ +
Sbjct:  270 HVIAAKAVAFGEALQPEFKDYAAQVVKNAKALAETLIEGGLDVVSGGTDNHLMLVDLRKKNATGKRAEAALGRAYITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFKEAEFREIGKLI 389          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_YERE8 (Serine hydroxymethyltransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.543e-19
Identity = 52/120 (43.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVALK+A  P FK Y +QV  NA A+      +GY +V+GGT+NHL L DL    +TG   +      NITVNKN+V  D  S     GVRIG+PA+T RG  E++  ++  ++
Sbjct:  267 HVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVAVFLERGYKVVSGGTDNHLFLLDLVDKNITGKDADAALGRANITVNKNSVPNDPKSPFVTSGVRIGSPAITRRGFKEEESRELAGWM 386          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_POLNA (Serine hydroxymethyltransferase OS=Polaromonas naphthalenivorans (strain CJ2) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.543e-19
Identity = 49/112 (43.75%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 339
            H I A A+A K+A +P FK Y +QV  NA  +   LT +G  +V+G TE+H++L DLR  G+TG + E +    ++T+NKNA+  D    +   GVRIGTPAMT+RG  +++
Sbjct:  264 HVIAAKAIAFKEALSPEFKIYQQQVLKNAQIVAETLTQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFGDEE 375          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_PHEZH (Serine hydroxymethyltransferase OS=Phenylobacterium zucineum (strain HLK1) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.543e-19
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA  +A  P FK YA+QV  NA AL   L   G+ +V+ GT++HL+L DL P G++G   E   +   IT NKN++ GD    +   G+R+GTPA T+RG    +F Q+G+++
Sbjct:  275 HVIAAKAVAFGEALKPEFKQYARQVIENARALAESLQSVGFKIVSNGTDSHLMLVDLTPKGVSGADAEIALERAGITTNKNSIPGDPLPPMQTSGLRVGTPAGTTRGFGPGEFRQVGKWI 394          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_DESOH (Serine hydroxymethyltransferase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.543e-19
Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKD 339
            H I A AVA  +A T  F AY +QV  NA AL  +L  +G  LV+GGT+NH++L DLR + +TG   E   +   +T+NKNAV F   +     GVRIGTP MT+RG+ E +
Sbjct:  264 HVIAAKAVAFGEALTDGFVAYQQQVVKNARALAAHLMEQGIELVSGGTDNHMMLADLRNISVTGKAAETALERAGLTLNKNAVPFDTENPTVTSGVRIGTPVMTTRGMKEPE 375          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_CHRVO (Serine hydroxymethyltransferase OS=Chromobacterium violaceum GN=glyA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.543e-19
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA K+A  PAFK Y +QV  NA  +   L  +G  +V+G TE+H+ L DLR  GLTG + + L    +ITVNKNA+  D  +     G+RIG+PA+T+RG  E +  ++   +
Sbjct:  264 HVIAAKAVAFKEALQPAFKEYQQQVLKNAAIMAKTLAERGLRIVSGRTESHVFLVDLRAKGLTGKQADALLGRAHITVNKNAIPNDPETPFVTSGIRIGSPAITTRGFKEAEAIEVANMV 383          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_AGRRK (Serine hydroxymethyltransferase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=glyA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.543e-19
Identity = 52/120 (43.33%), Postives = 67/120 (55.83%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVAL +A  P F+ YA Q+  NA AL   L   G  +V+GGT+NHL+L DLR    TG + E       +T NKN + F         GVR+GTPA T+RG  E +F +IG  +
Sbjct:  272 HVIAAKAVALGEALQPEFQDYAAQIVKNAKALSETLISGGVDVVSGGTDNHLMLVDLRKKNATGKRAEAALGRAYVTCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFKEAEFREIGNLI 391          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_THIDA (Serine hydroxymethyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 51/120 (42.50%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   A A K+A+T  FK Y +QV  NA+ +   L  +G  +++G TE+H+ L DLR   LTG + E L    +ITVNKNA+  D        G+RIGTPAMT+RG  E + EQ+   +
Sbjct:  264 HVIAGKATAFKEAATKDFKRYQEQVIDNALVMCKVLVERGLRIISGRTESHVFLVDLRAKNLTGKEAEALLGRAHITVNKNAIPNDPQKPFVTSGIRIGTPAMTTRGFTELEAEQLAHLI 383          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_BDEBA1.947e-1938.78Serine hydroxymethyltransferase OS=Bdellovibrio ba... [more]
GLYA_BAUCH1.947e-1941.67Serine hydroxymethyltransferase OS=Baumannia cicad... [more]
GLYA1_AGRT51.947e-1945.00Serine hydroxymethyltransferase 1 OS=Agrobacterium... [more]
GLYA_YERE82.543e-1943.33Serine hydroxymethyltransferase OS=Yersinia entero... [more]
GLYA_POLNA2.543e-1943.75Serine hydroxymethyltransferase OS=Polaromonas nap... [more]
GLYA_PHEZH2.543e-1942.50Serine hydroxymethyltransferase OS=Phenylobacteriu... [more]
GLYA_DESOH2.543e-1946.43Serine hydroxymethyltransferase OS=Desulfococcus o... [more]
GLYA_CHRVO2.543e-1942.50Serine hydroxymethyltransferase OS=Chromobacterium... [more]
GLYA_AGRRK2.543e-1943.33Serine hydroxymethyltransferase OS=Agrobacterium r... [more]
GLYA_THIDA3.321e-1942.50Serine hydroxymethyltransferase OS=Thiobacillus de... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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