CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SULNB (Serine hydroxymethyltransferase OS=Sulfurovum sp. (strain NBC37-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 53/116 (45.69%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQI 351
            H I A AV  K   +  +K YAKQVKANA  L + L  +GY +V+GGT+NHLVL        +G   +       ITVNKN V G++ S     G+RIG+PA+TSRG+ E +FE I
Sbjct:  262 HVIAAKAVGFKHNLSDEWKVYAKQVKANASILADVLIKRGYDVVSGGTDNHLVLVSFLDKEFSGKDADAALGAAGITVNKNTVPGETRSPFVTSGIRIGSPALTSRGMKEIEFEII 377          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_LACS1 (Serine hydroxymethyltransferase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 58/158 (36.71%), Postives = 86/158 (54.43%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGN-YLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKAD 474
            H I   A A  +A TP FK Y +Q+  N   +   +   +   LV+ G++NHL+L D+R  GL G + EKL D  NITVNKN++ F   S     G+RIGTPA+TSRG  E+D  Q+ + +     LT+   K+  ++L D  + +    D   + A+
Sbjct:  261 HVIAGKAAAFGEALTPEFKEYGEQIIRNTQEMALCFADNEKARLVSNGSDNHLLLLDVRNFGLNGKEAEKLLDQVNITVNKNSIPFETLSPFKTSGIRIGTPAITSRGFNEEDSYQVAKLI-----LTVLANKDDEQVLADVKRQVKELTDAHPIYAE 413          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_KOSOT (Serine hydroxymethyltransferase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 57/159 (35.85%), Postives = 85/159 (53.46%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV--------TLTLEIQKEYGKLLKDFNKGLVNNKDI 456
            H I A AVA  +A    FK Y  ++  NA AL   L   G  +V+GGT+ HL L DL P  +TG   EK  +  +ITVNKN +  ++ S     G+RIGTPA+T+RG+ E + + I E + + +        T+  EI++E  K + +  +     KD+
Sbjct:  263 HVIAAKAVAFGEALKDEFKEYQMRIITNAKALAKELENLGLRIVSGGTDTHLFLVDLNPKNVTGKAAEKALESADITVNKNTIPKETRSPFVTSGIRIGTPAVTTRGMGESEMKVIAELIVKVIDNIQDEKGTIPEEIREEVKKAVHELTEKFPLYKDL 421          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_CHLFF (Serine hydroxymethyltransferase OS=Chlamydophila felis (strain Fe/C-56) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 53/139 (38.13%), Postives = 76/139 (54.68%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSAL-APGGVRIGTPAMTSRGLLEKDFEQIGEFL---HRAVTLTLEIQKEYGK 411
            H I A A+ALK+A T  FK YA QV  NA  L  +    G  L+TGGT+NH+++ DL  LG+ GN  E +     I VN+N +  DS  +    G+R+GTPA+TS G+   + E++   +    R +TL       + K
Sbjct:  323 HVIAAKAIALKEALTVDFKKYAHQVVDNARTLAEHFQKHGLRLLTGGTDNHMLIIDLTSLGIPGNVAEDILSSVGIAVNRNTIPSDSEGVWRTSGIRLGTPALTSLGMGSDEMEEVANIIVKVLRNITLRRNADDNFSK 461          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_BRUSU (Serine hydroxymethyltransferase OS=Brucella suis GN=glyA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 53/120 (44.17%), Postives = 66/120 (55.00%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVA  +A    FK YAK V  NA AL   L   G  +V+GGT+NHL+L DLRP   TG + E      NIT NKN + F         GVR+GTPA T+RG    +F++IG  +
Sbjct:  278 HVIAGKAVAFAEALKLEFKLYAKNVVDNARALAEELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFGVAEFKEIGSLI 397          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_BRUC2 (Serine hydroxymethyltransferase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 53/120 (44.17%), Postives = 66/120 (55.00%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVA  +A    FK YAK V  NA AL   L   G  +V+GGT+NHL+L DLRP   TG + E      NIT NKN + F         GVR+GTPA T+RG    +F++IG  +
Sbjct:  278 HVIAGKAVAFAEALKLEFKLYAKNVVDNARALAEELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPFDPEKPFVTSGVRLGTPAGTTRGFGVAEFKEIGSLI 397          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_AZOSB (Serine hydroxymethyltransferase OS=Azoarcus sp. (strain BH72) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 53/121 (43.80%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYL-TGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA K+A+TPAF+ Y +QV ANA  +   L   +G  +V+G TE+H+ L DLR   +TG + E +    +ITVNKN++  D        G+RIG+PAMT+RG  E + EQI   +
Sbjct:  264 HVIAAKAVAFKEAATPAFRDYQEQVIANARVMARVLGEERGLRIVSGRTESHVFLVDLRSKNITGKEAEAVLGSAHITVNKNSIPNDPQKPFVTSGIRIGSPAMTTRGFTEIEAEQIAHLI 384          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_ANASK (Serine hydroxymethyltransferase OS=Anaeromyxobacter sp. (strain K) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 51/124 (41.13%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 375
            H I A AVA  +A  P FKAY +++  NA  L   L   G  LV+GGT+NHL+L DLRP  LTG   E+      ITVNKN +  D    +   G+R+GTPA+T+RG+  ++   +   + R +
Sbjct:  264 HVIAAKAVAFGEALRPEFKAYQRRIVENAQVLAEGLKSAGLRLVSGGTDNHLMLVDLRPKKLTGKIAEEALGRAGITVNKNMIPWDPEKPMTTSGIRVGTPALTTRGMGSREMTLVAALIGRVL 387          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_ANAD2 (Serine hydroxymethyltransferase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 51/124 (41.13%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 375
            H I A AVA  +A  P FKAY +++  NA  L   L   G  LV+GGT+NHL+L DLRP  LTG   E+      ITVNKN +  D    +   G+R+GTPA+T+RG+  ++   +   + R +
Sbjct:  264 HVIAAKAVAFGEALRPEFKAYQRRIVENAQVLAEGLKSAGLRLVSGGTDNHLMLVDLRPKKLTGKIAEEALGKAGITVNKNMIPWDPEKPMTTSGIRVGTPALTTRGMGSREMTLVAALIGRVL 387          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_ACIF5 (Serine hydroxymethyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 54/117 (46.15%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 354
            H I A AVA ++A  P FK+Y +QV  NA  L   L G+GY  V+GGT+NHL L +L    +TG + E+     NITVNKNAV F         G+RIGTPA T+RG  E +  ++G
Sbjct:  265 HVIAAKAVAFREALQPEFKSYQQQVIHNAQTLSKVLAGRGYGAVSGGTDNHLFLLNLGE-KVTGKEAEEALGQANITVNKNAVPFDIRPPAVTSGIRIGTPAATTRGFGEAEMHRLG 380          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_SULNB3.321e-1945.69Serine hydroxymethyltransferase OS=Sulfurovum sp. ... [more]
GLYA_LACS13.321e-1936.71Serine hydroxymethyltransferase OS=Lactobacillus s... [more]
GLYA_KOSOT3.321e-1935.85Serine hydroxymethyltransferase OS=Kosmotoga olear... [more]
GLYA_CHLFF3.321e-1938.13Serine hydroxymethyltransferase OS=Chlamydophila f... [more]
GLYA_BRUSU3.321e-1944.17Serine hydroxymethyltransferase OS=Brucella suis G... [more]
GLYA_BRUC23.321e-1944.17Serine hydroxymethyltransferase OS=Brucella canis ... [more]
GLYA_AZOSB3.321e-1943.80Serine hydroxymethyltransferase OS=Azoarcus sp. (s... [more]
GLYA_ANASK3.321e-1941.13Serine hydroxymethyltransferase OS=Anaeromyxobacte... [more]
GLYA_ANAD23.321e-1941.13Serine hydroxymethyltransferase OS=Anaeromyxobacte... [more]
GLYA_ACIF53.321e-1946.15Serine hydroxymethyltransferase OS=Acidithiobacill... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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