CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_ACIF2 (Serine hydroxymethyltransferase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 54/117 (46.15%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 354
            H I A AVA ++A  P FK+Y +QV  NA  L   L G+GY  V+GGT+NHL L +L    +TG + E+     NITVNKNAV F         G+RIGTPA T+RG  E +  ++G
Sbjct:  265 HVIAAKAVAFREALQPEFKSYQQQVIHNAQTLSKVLAGRGYGAVSGGTDNHLFLLNLGE-KVTGKEAEEALGQANITVNKNAVPFDIRPPAVTSGIRIGTPAATTRGFGEAEMHRLG 380          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_ACICJ (Serine hydroxymethyltransferase OS=Acidiphilium cryptum (strain JF-5) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 50/120 (41.67%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA  +A  P F+AY K +  NA  L   L   G  +VTGGT+ HL+L DLRP  +TG   E   +  ++T NKNA+ F  +      G+R+GTPA T+RG    +F  +G F+
Sbjct:  276 HVIAAKAVAFGEALRPEFRAYQKALAENAKVLAETLVEGGLDIVTGGTDCHLMLVDLRPKNVTGKAAEASLERAHMTANKNAIPFDPAKPAVTSGIRLGTPAATTRGFGPDEFRMVGRFI 395          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_ACIAC (Serine hydroxymethyltransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 48/112 (42.86%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 339
            H I A AVA K+A TP FKAY +QV  NA      L  +G  +++G TE+H++L DLR  G+TG   E      +IT+NKN++  D    +   G+R+GTPA+T+RG  E++
Sbjct:  264 HVIAAKAVAFKEALTPEFKAYQQQVAKNAKVFAETLIERGLRIISGRTESHVMLVDLRAKGITGKAAEAALGQAHITINKNSIPNDPEKPMVTSGIRVGTPAITTRGFKEEE 375          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA1_VIBPA (Serine hydroxymethyltransferase 1 OS=Vibrio parahaemolyticus GN=glyA1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.321e-19
Identity = 51/120 (42.50%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVA K+A  P FKAY  +V  NA A+      +GY +V+ GTENHL L DL    +TG   +      NITVNKN+V  D  S     G+R+GTPA+T RG  E+D + +  ++
Sbjct:  266 HVIAGKAVAFKEAMEPEFKAYQARVVKNAKAMVGQFQERGYKIVSNGTENHLFLVDLIDKDITGKDADAALGAANITVNKNSVPNDPRSPFVTSGIRVGTPAITRRGFTEEDAKDLANWM 385          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_STAS1 (Serine hydroxymethyltransferase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 51/121 (42.15%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA  +A    FK Y +QV  NA  L N LT +G+ +V+GGT+NHLV  D++  +G+TG   E+  D   IT NKN + F         G+R+GTPA T+RG  E  FE++ + +
Sbjct:  261 HVIAAKAVAFGEALQDDFKVYQQQVIQNAKTLANTLTDEGFRVVSGGTDNHLVAVDVKGSVGITGKVAEETLDAIGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDETAFEEVAKII 381          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SHEWM (Serine hydroxymethyltransferase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 64/169 (37.87%), Postives = 84/169 (49.70%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 510
            H I A AVA K+A  P F AY +QV  NA A+      +GY +V+GGT+NHL L DL    +TG   +    L NITVNKN+V  D  S     G+RIG+PA+T RG  E           +AV LT          + D    + N   IE +K  V +  + F + G
Sbjct:  268 HVIAAKAVAFKEALEPEFTAYQEQVVVNAQAMAKTFIERGYDVVSGGTDNHLFLLDLISKDITGKDADAALGLANITVNKNSVPNDPRSPFVTSGLRIGSPAITRRGFKEA----------QAVELT--------NWMCDVLDDITNEGTIERVKNQVLELCAKFPVYG 418          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SHESW (Serine hydroxymethyltransferase OS=Shewanella sp. (strain W3-18-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 53/116 (45.69%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 351
            H I   AVA K+A  P FK Y +QV  NA A+      +GY +V+GGT NHL+L DL    LTG + +      NITVNKN+V  D  S     GVRIGTPA+T RG  E + +++
Sbjct:  267 HVIAGKAVAFKEALEPEFKVYQQQVVNNAKAMVEVFLERGYKIVSGGTSNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGVRIGTPAITRRGFKEAESKEL 382          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SHESH (Serine hydroxymethyltransferase OS=Shewanella sediminis (strain HAW-EB3) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 52/120 (43.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA K+A  P F AY +QV  NA A+      +GY +V+GGT+NHL L DL    +TG   +    L NITVNKN+V  D  S     G+RIG+PA+T RG  E+   ++  ++
Sbjct:  268 HVIAAKAVAFKEALEPEFTAYQEQVVVNAKAMAKTFIERGYDVVSGGTDNHLFLLDLISKDITGKDADAALGLANITVNKNSVPNDPRSPFVTSGLRIGSPAITRRGFKEEQSVELTNWM 387          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SHELP (Serine hydroxymethyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 62/169 (36.69%), Postives = 84/169 (49.70%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 510
            H I   AVA K+A +P FK Y +QV  NA A+ N    +G+ +V+GGTENHL L DL    +TG   +      NITVNKN+V  D  S     G+RIG+PA+T RG  E +               +E+      +L D N    N   IE +K  V +  + F + G
Sbjct:  267 HVIAGKAVAFKEALSPEFKEYQQQVVVNAKAMANTFIERGFDVVSGGTENHLFLLDLIAKDITGKDADAALGRANITVNKNSVPNDPRSPFVTSGLRIGSPAITRRGFKEAE--------------AVELTNWICDVLDDIN----NEATIERVKNQVLELCAKFPVYG 417          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SHEDO (Serine hydroxymethyltransferase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 53/112 (47.32%), Postives = 66/112 (58.93%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKD 339
            H I   AVA K+A  P FK Y +QV  NA A+      +GY +V+GGT+NHL+L DL    LTG + +      NITVNKN+V  D  S     GVRIGTPA+T RG  E +
Sbjct:  267 HVIAGKAVAFKEALEPEFKTYQQQVVKNAKAMVEVFIERGYKIVSGGTDNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGVRIGTPAITRRGFKEAE 378          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_ACIF23.321e-1946.15Serine hydroxymethyltransferase OS=Acidithiobacill... [more]
GLYA_ACICJ3.321e-1941.67Serine hydroxymethyltransferase OS=Acidiphilium cr... [more]
GLYA_ACIAC3.321e-1942.86Serine hydroxymethyltransferase OS=Acidovorax aven... [more]
GLYA1_VIBPA3.321e-1942.50Serine hydroxymethyltransferase 1 OS=Vibrio paraha... [more]
GLYA_STAS14.337e-1942.15Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_SHEWM4.337e-1937.87Serine hydroxymethyltransferase OS=Shewanella wood... [more]
GLYA_SHESW4.337e-1945.69Serine hydroxymethyltransferase OS=Shewanella sp. ... [more]
GLYA_SHESH4.337e-1943.33Serine hydroxymethyltransferase OS=Shewanella sedi... [more]
GLYA_SHELP4.337e-1936.69Serine hydroxymethyltransferase OS=Shewanella loih... [more]
GLYA_SHEDO4.337e-1947.32Serine hydroxymethyltransferase OS=Shewanella deni... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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