CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5829 contig Csv1_Contig5829:975..1547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SHEB9 (Serine hydroxymethyltransferase OS=Shewanella baltica (strain OS195) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 53/116 (45.69%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 351
            H I   AVA K+A  P FK Y +QV  NA A+      +GY +V+GGT NHL+L DL    LTG + +      NITVNKN+V  D  S     GVRIGTPA+T RG  E + +++
Sbjct:  267 HVIAGKAVAFKEALEPEFKVYQQQVVNNAKAMVEVFLERGYKIVSGGTSNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGVRIGTPAITRRGFKEAESKEL 382          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SHEB8 (Serine hydroxymethyltransferase OS=Shewanella baltica (strain OS185) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 53/116 (45.69%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 351
            H I   AVA K+A  P FK Y +QV  NA A+      +GY +V+GGT NHL+L DL    LTG + +      NITVNKN+V  D  S     GVRIGTPA+T RG  E + +++
Sbjct:  267 HVIAGKAVAFKEALEPEFKVYQQQVVNNAKAMVEVFLERGYKIVSGGTSNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGVRIGTPAITRRGFKEAESKEL 382          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SHEB2 (Serine hydroxymethyltransferase OS=Shewanella baltica (strain OS223) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 53/116 (45.69%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 351
            H I   AVA K+A  P FK Y +QV  NA A+      +GY +V+GGT NHL+L DL    LTG + +      NITVNKN+V  D  S     GVRIGTPA+T RG  E + +++
Sbjct:  267 HVIAGKAVAFKEALEPEFKVYQQQVVNNAKAMVEVFLERGYKIVSGGTSNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGVRIGTPAITRRGFKEAESKEL 382          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_PHYMT (Serine hydroxymethyltransferase OS=Phytoplasma mali (strain AT) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 51/127 (40.16%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPL--GLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 378
            H I A AVA K+A    F  Y KQ+  NA      L  KGY +++  TENHL L D++      TG K+  + +  NI VNKN + F   + L   G+R+GTPAMT+RG  E +F ++ +F+  A+T
Sbjct:  267 HIIAAKAVAFKEALHSDFIKYQKQILKNACFFAENLQKKGYRIISKSTENHLFLVDVKSKNPNFTGKKISDILNKVNIVVNKNVIPFDKETPLITSGIRLGTPAMTTRGFKENEFAKVSDFIDEAIT 393          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_MYCGA (Serine hydroxymethyltransferase OS=Mycoplasma gallisepticum GN=glyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 52/125 (41.60%), Postives = 74/125 (59.20%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDL-RPLGLTGNKVEKLCDLCNITVNKNAVFGDSS-ALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 375
            H I A A+A  +A  P FK Y K V  N+ A       KGY ++  GT+NHL   +L +   LTG+ VE      NI VNKN +  DS+ ++ P G+R+GT AMTSRGL++ DF QI +++ + +
Sbjct:  259 HVIAAKAIAFDEALQPKFKTYIKNVIDNSKAFCEAFINKGYQIIANGTDNHLFSINLFKKFNLTGDLVENWLYQANIVVNKNMIPYDSNKSMNPSGIRLGTAAMTSRGLVQSDFVQIADWIDQII 383          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_LISW6 (Serine hydroxymethyltransferase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 53/125 (42.40%), Postives = 72/125 (57.60%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG----EFLH 366
            H I A AVA  +A  P F  Y +Q+  N+  L   L     +++TGG++NHL+L DL+PL LTG  VEK+ D   ITVNKN + F   S     G+R+G  A+T+RG  E   E++G    E LH
Sbjct:  261 HVIAAKAVAFGEALQPEFTTYCEQIIRNSKKLAETLQAHDVTVLTGGSDNHLLLIDLKPLSLTGKAVEKVLDEVGITVNKNTIPFETESPFVTSGIRVGVAAVTTRGFDEVAIEKVGVLISEVLH 385          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_JANSC (Serine hydroxymethyltransferase OS=Jannaschia sp. (strain CCS1) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 53/124 (42.74%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 375
            H I   AVA  +A  P F+ Y  QV ANA AL   L   G  +VTGGT+ HL+L DLR  G+ GN  EK     +IT NKN + F     +   G+R+G+PA T+RG  E +F QI +++   V
Sbjct:  281 HVIAGKAVAFGEALRPEFRDYQTQVIANAQALAAQLIKGGLDIVTGGTDTHLMLVDLRAKGVKGNATEKALGRAHITCNKNGIPFDTEKPMVTSGLRLGSPAGTTRGFGEAEFRQIADWIVEVV 404          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_JANMA (Serine hydroxymethyltransferase OS=Janthinobacterium sp. (strain Marseille) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 59/169 (34.91%), Postives = 85/169 (50.30%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 510
            H I   AVA K+A  P FK Y +QV  NA AL   L  +G  +V+  TE+H++L DLR   +TG   E L    +IT NKNA+  D        G+R+G+PAMT+RG  E +  ++                  G L+ D  +   +   IE +KA+V+K   +F + G
Sbjct:  264 HVIAGKAVAFKEALAPEFKTYQQQVVKNADALAKALIARGLRIVSNRTESHVMLVDLRAKKITGKDAENLLGSAHITCNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKEAEATKV------------------GNLIADVLENPNDAATIERVKAEVKKLTDAFPVYG 414          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_EHRCR (Serine hydroxymethyltransferase OS=Ehrlichia chaffeensis (strain Arkansas) GN=glyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 55/153 (35.95%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG-------EFLHRAVTLTLEIQKEYGKLLKDFNKGLV 441
            H I A AVA  +A  P FK YAKQ+  N+ ALG     +G  LVTGGT++H+V+ DLR   +TG       +   I  NKNA+ F         G+R G+ A TSRGL E +F +IG       + L  + ++ L ++++  K +K+     +
Sbjct:  268 HVIAAKAVAFAEALKPEFKDYAKQIIKNSKALGEVFKERGLDLVTGGTDSHMVVLDLRSKSVTGKDAVLALEKLGIICNKNAIPFDPEKPFVTSGLRFGSAAETSRGLQESEFREIGSMVCDVIDSLKASDSVRLSVERDIIKRVKELTSNFI 420          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_BACTN (Serine hydroxymethyltransferase OS=Bacteroides thetaiotaomicron GN=glyA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.337e-19
Identity = 55/127 (43.31%), Postives = 74/127 (58.27%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPL--GLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 378
            H I A AVA  +   P +K YAKQV+ NA  L   L  +G+++V+GGT+NH +L DLR     LTG   EK     +ITVNKN V F   SA    G+R+GTPA+T+RG  E    +I E +   ++
Sbjct:  273 HVIAAKAVAFGEILQPEYKEYAKQVQKNAAILAQALIDRGFTIVSGGTDNHSMLVDLRSKYPDLTGKVAEKALVSADITVNKNMVPFDSRSAFQTSGIRLGTPAITTRGAKEDLMIEIAEMIETVLS 399          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_SHEB94.337e-1945.69Serine hydroxymethyltransferase OS=Shewanella balt... [more]
GLYA_SHEB84.337e-1945.69Serine hydroxymethyltransferase OS=Shewanella balt... [more]
GLYA_SHEB24.337e-1945.69Serine hydroxymethyltransferase OS=Shewanella balt... [more]
GLYA_PHYMT4.337e-1940.16Serine hydroxymethyltransferase OS=Phytoplasma mal... [more]
GLYA_MYCGA4.337e-1941.60Serine hydroxymethyltransferase OS=Mycoplasma gall... [more]
GLYA_LISW64.337e-1942.40Serine hydroxymethyltransferase OS=Listeria welshi... [more]
GLYA_JANSC4.337e-1942.74Serine hydroxymethyltransferase OS=Jannaschia sp. ... [more]
GLYA_JANMA4.337e-1934.91Serine hydroxymethyltransferase OS=Janthinobacteri... [more]
GLYA_EHRCR4.337e-1935.95Serine hydroxymethyltransferase OS=Ehrlichia chaff... [more]
GLYA_BACTN4.337e-1943.31Serine hydroxymethyltransferase OS=Bacteroides the... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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