CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_BACSK (Serine hydroxymethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.639e-24
Identity = 62/126 (49.21%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 381
            H I A AVA  +A +  FK YAKQ+ ANA  LG  L  +G  +V+GGT+NHL+L DLR L LTG   EK  D   IT NKNA+ F         G+RIGT A+TSRG  E + ++IGE +  A+TL
Sbjct:  265 HVIAAKAVAFGEALSDEFKTYAKQIIANAKRLGEKLQAEGVDIVSGGTDNHLLLLDLRSLQLTGKVAEKALDAVGITTNKNAIPFDPEKPFVTSGIRIGTAAVTSRGFGENEMDEIGELI--ALTL 388          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_GLOVI (Serine hydroxymethyltransferase OS=Gloeobacter violaceus GN=gylA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.976e-24
Identity = 60/125 (48.00%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 378
            H I A AVA  +A  P FK YA  V ANA AL   LT +G +LV+GGT+NHL+L DLR + LTG + + L    NIT NKN + F   S     G+R+G+PAMT+RGL   +F +IGE +   +T
Sbjct:  266 HVIAAKAVAFGEALQPEFKTYAADVVANARALAERLTARGLTLVSGGTDNHLMLVDLRSVDLTGKQADLLMSDVNITTNKNTIPFDPQSPFVTSGLRLGSPAMTTRGLGTTEFGEIGEIIANRLT 390          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSM (Serine hydroxymethyltransferase OS=Geobacter sp. (strain M21) GN=glyA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.976e-24
Identity = 59/120 (49.17%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA K+A TP FK Y +Q+  NA AL   LT +G+ L +GGT+NHL+L DL    LTG   E+  D   ITVNKN + F   S     G+RIGTPA TS GL E + EQ+  F+
Sbjct:  261 HVIAAKAVAFKEALTPEFKKYQEQIVKNAKALAEGLTKRGFKLTSGGTDNHLMLVDLSQTELTGKVAEEALDRAGITVNKNGIPFDTRSPFITSGIRIGTPAATSHGLKEAEMEQVAGFI 380          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_DEIRA (Serine hydroxymethyltransferase OS=Deinococcus radiodurans GN=glyA PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 9.976e-24
Identity = 57/124 (45.97%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 375
            H I A AVA  +A  P FK YA+Q+  NA AL      KGY +V+GGT+NHL L DLRP GL G K  +L D  +IT++K+ + +     L  GG+RIGTPA+T+RG+ E    Q+ + + RA+
Sbjct:  266 HVIAAKAVAFGEALRPEFKDYARQIIKNAQALAGEFQQKGYRVVSGGTDNHLFLLDLRPQGLNGTKATRLLDANHITISKSTLPYDTEKILHGGGIRIGTPAVTTRGMTEAHMTQVADLIDRAL 389          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_CYAP8 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=glyA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.976e-24
Identity = 56/120 (46.67%), Postives = 79/120 (65.83%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A  VA  +A  P FKAY+ QV AN+ AL   L  +G+ LV+GGT+NHL+L DLR +G+TG + ++L    NIT NKN V F   S     G+R+G+PA+T+RG+ E +F++IG  +
Sbjct:  267 HVIAAKGVAFGEALKPQFKAYSGQVIANSRALAAQLMERGFKLVSGGTDNHLMLVDLRSIGMTGKEADRLVSEINITANKNTVPFDPESPFVTSGLRLGSPALTTRGMGESEFKEIGNII 386          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_CHLTE (Serine hydroxymethyltransferase OS=Chlorobium tepidum GN=glyA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.976e-24
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 378
            H I   AVA  +A  P FKAYA+Q+K NA A+       GY +V+GGT+NHL+L DLR   + G   E L     ITVNKN V F D S     G+RIGTPAMT+RG+   + E+I EF+ R ++
Sbjct:  282 HIIAGKAVAFGEALQPEFKAYAQQIKDNAAAMAAKFLAAGYHIVSGGTKNHLMLLDLRNKNVNGKVAENLLHEAGITVNKNMVPFDDKSPFVTSGIRIGTPAMTTRGMKVAEAEKIVEFIDRVIS 406          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_THELT (Serine hydroxymethyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glyA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23
Identity = 56/129 (43.41%), Postives = 79/129 (61.24%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLE 390
            H I A AV  K+A +  F  Y KQV ANA  L N L+  G  +V+GGT+ HL+L DL PL +TG   EK  + C +TVNKN +  ++ S     G+RIGTPA+T+RG+ EK+ ++I E +   +   L+
Sbjct:  263 HVIAAKAVCFKEAMSSGFVEYQKQVIANAKTLANELSSMGLRIVSGGTDTHLMLVDLTPLNVTGKAAEKALEKCGVTVNKNTIPNETRSPFVASGIRIGTPAVTTRGMREKEMKKIAELIFEVLKNVLD 391          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_RICRS (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Sheila Smith) GN=glyA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23
Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 477
            H I A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  266 HIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQQV 405          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_RICRO (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Iowa) GN=glyA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23
Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 477
            H I A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  266 HIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQQV 405          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_NITWN (Serine hydroxymethyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=glyA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23
Identity = 64/136 (47.06%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK 411
            H I A AVAL +A  P FK YAK V  NA AL   L G G+ +V+GGT+NHL+L DLRP GL GN  EK      +T NKN + F         G+R+GTPA T+RG    +F+Q+G  +  A  LT   Q E GK
Sbjct:  277 HVIAAKAVALGEALRPDFKIYAKNVVENARALAESLRGHGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAGLTCNKNGIPFDPEKPFVTSGLRLGTPATTTRGFGVSEFKQVGGLI--AEVLTAIAQAEDGK 410          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_BACSK7.639e-2449.21Serine hydroxymethyltransferase OS=Bacillus clausi... [more]
GLYA_GLOVI9.976e-2448.00Serine hydroxymethyltransferase OS=Gloeobacter vio... [more]
GLYA_GEOSM9.976e-2449.17Serine hydroxymethyltransferase OS=Geobacter sp. (... [more]
GLYA_DEIRA9.976e-2445.97Serine hydroxymethyltransferase OS=Deinococcus rad... [more]
GLYA_CYAP89.976e-2446.67Serine hydroxymethyltransferase OS=Cyanothece sp. ... [more]
GLYA_CHLTE9.976e-2447.20Serine hydroxymethyltransferase OS=Chlorobium tepi... [more]
GLYA_THELT1.303e-2343.41Serine hydroxymethyltransferase OS=Thermotoga lett... [more]
GLYA_RICRS1.303e-2340.51Serine hydroxymethyltransferase OS=Rickettsia rick... [more]
GLYA_RICRO1.303e-2340.51Serine hydroxymethyltransferase OS=Rickettsia rick... [more]
GLYA_NITWN1.303e-2347.06Serine hydroxymethyltransferase OS=Nitrobacter win... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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