CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_GEOLS (Serine hydroxymethyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=glyA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.951e-23
Identity = 62/147 (42.18%), Postives = 79/147 (53.74%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT------LTLEIQKEYGKLLKDF 426
            H I A AVA K+A  P FK Y +Q+  NA  L   L  KG+ L +GGT+NHL+L +     +TG   E+  D   ITVNKN V F   S     G+R+GTPA TS GL E + EQ+  F+  AV           IQK   +L+K F
Sbjct:  261 HVIAAKAVAFKEALQPEFKTYQQQIVKNAAKLAECLMAKGFKLTSGGTDNHLMLINFTGTEITGKAAEEALDKAGITVNKNTVPFETRSPFVTSGIRVGTPACTSHGLKETEMEQVAGFIADAVANIGNDEALAAIQKRVNELMKKF 407          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_CLOTH (Serine hydroxymethyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=glyA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.951e-23
Identity = 57/125 (45.60%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 378
            H I A AV+  +  T  FK Y +Q+  NA  L N L  KG  LV+GGT+NHL+L DLR  GLTG  V+ + D   ITVNKN + F   S     G+RIGTPA+T+RG+ E+D  +I + ++  +T
Sbjct:  264 HVIAAKAVSFAEVLTDEFKQYQQQIVKNAKTLANALMEKGIDLVSGGTDNHLMLVDLRNKGLTGKYVQHILDEVCITVNKNGIPFDPESPFVTSGIRIGTPAVTARGMKEEDMVEIADLINLTIT 388          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_THET8 (Serine hydroxymethyltransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=glyA PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.466e-23
Identity = 57/124 (45.97%), Postives = 74/124 (59.68%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 375
            H I   AVA  +A  P FK Y++ V  NA  L   L  +GY +VTGGT+NHL L DLRP GLTG + E+  D   ITVNKNA+ F         G+RIGTPA+T+RG   ++   + E + RA+
Sbjct:  262 HVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRAL 385          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_THET2 (Serine hydroxymethyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=glyA PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 6.466e-23
Identity = 57/124 (45.97%), Postives = 74/124 (59.68%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 375
            H I   AVA  +A  P FK Y++ V  NA  L   L  +GY +VTGGT+NHL L DLRP GLTG + E+  D   ITVNKNA+ F         G+RIGTPA+T+RG   ++   + E + RA+
Sbjct:  262 HVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEALARRGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRAL 385          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_THEP1 (Serine hydroxymethyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glyA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.466e-23
Identity = 58/148 (39.19%), Postives = 84/148 (56.76%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV--------TLTLEIQKEYGKLLKD 423
            H I A AV  K+A T  FK Y KQV  NA  +      +GY +V+GGT+ HL L DL P  +TG   EK  + C ITVNKN +  +  S     G+RIGTPA+T+RG+ E++ E+I E +   +        T+  E+++E  K +++
Sbjct:  263 HVIAAKAVCFKEAMTEEFKEYQKQVVKNAKKMAEEFQKRGYRIVSGGTDTHLFLVDLTPKDITGKAAEKALESCGITVNKNTIPNEKRSPFVASGIRIGTPAVTTRGMKEEEMEEIAEMIDLVLSNVTDENGTVKPEVREEVSKRVRE 410          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_THEMA (Serine hydroxymethyltransferase OS=Thermotoga maritima GN=glyA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.466e-23
Identity = 58/148 (39.19%), Postives = 84/148 (56.76%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV--------TLTLEIQKEYGKLLKD 423
            H I A AV  K+A T  FK Y KQV  NA  +      +GY +V+GGT+ HL L DL P  +TG   EK  + C ITVNKN +  +  S     G+RIGTPA+T+RG+ E++ E+I E +   +        T+  E+++E  K +++
Sbjct:  263 HVIAAKAVCFKEAMTEEFKEYQKQVVKNAKKMAEEFQKRGYRIVSGGTDTHLFLVDLTPKDITGKAAEKALESCGITVNKNTIPNEKRSPFVASGIRIGTPAVTTRGMKEEEMEEIAEMIDLVLSNVIDENGTVKPEVREEVSKKVRE 410          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_PETMO (Serine hydroxymethyltransferase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=glyA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.466e-23
Identity = 63/154 (40.91%), Postives = 90/154 (58.44%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEAL 465
            H I A AVA K+A +  FK Y KQV  N+ AL N L  K   +V+GGT+ HL L DL  L +TG  +EK    C+ITVNKN V  ++ S     G+RIGTPA+T+RG+ E++ ++I   + +     L+   E G + KD  + +   KD+ +L
Sbjct:  263 HIIAAKAVAFKEAMSGEFKEYQKQVVRNSKALSNELASKNLRIVSGGTDTHLFLVDLSELNITGKALEKALGQCDITVNKNTVPKETLSPFVTSGIRIGTPAVTTRGMKEEEMKEIASMIAKVANNVLD---EEGNIDKDLAQEI--KKDVVSL 411          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_DESAP (Serine hydroxymethyltransferase OS=Desulforudis audaxviator (strain MP104C) GN=glyA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.466e-23
Identity = 62/133 (46.62%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 402
            H I A AVAL +A  P FK Y +Q+  NA AL   L  +G+ LV GGT+ HL+L DLR  GLTG   E L D  ++TVNKN V F         G+RIGTPA+T+RG+ E    QI E     ++LTL+  +E
Sbjct:  264 HVIAAKAVALGEAQRPEFKTYQEQIVKNARALAQALQERGFELVAGGTDTHLILVDLRNKGLTGAVAEDLLDRVDVTVNKNMVPFDPQPPRVTSGIRIGTPAVTTRGMKEDSMVQIAE----VISLTLDHPEE 392          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_RHOP5 (Serine hydroxymethyltransferase OS=Rhodopseudomonas palustris (strain BisA53) GN=glyA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23
Identity = 57/117 (48.72%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 354
            H I A AVA K+A  P FK YAK V  NA AL   L G G+ +V+GGT+NHL+L DLRP  L GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G
Sbjct:  277 HVIAAKAVAFKEALQPDFKVYAKNVVENAKALAETLRGHGFDIVSGGTDNHLMLVDLRPKALKGNVSEKALVRAGITCNKNGIPFDPEKPFVTSGIRLGTPAATTRGFGVAEFQQVG 393          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_RHOP2 (Serine hydroxymethyltransferase OS=Rhodopseudomonas palustris (strain HaA2) GN=glyA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23
Identity = 58/120 (48.33%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I A AVA K+A  P FK YAK V  NA AL   L   G+ LV+GGT+NHL+L DLRP GL GN  EK      IT NKN + F         G+R+GTPA T+RG    +F+Q+G  +
Sbjct:  277 HVIAAKAVAFKEALQPDFKVYAKNVVENAKALAETLRAAGFDLVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAAITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVGNLI 396          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_GEOLS4.951e-2342.18Serine hydroxymethyltransferase OS=Geobacter lovle... [more]
GLYA_CLOTH4.951e-2345.60Serine hydroxymethyltransferase OS=Clostridium the... [more]
GLYA_THET86.466e-2345.97Serine hydroxymethyltransferase OS=Thermus thermop... [more]
GLYA_THET26.466e-2345.97Serine hydroxymethyltransferase OS=Thermus thermop... [more]
GLYA_THEP16.466e-2339.19Serine hydroxymethyltransferase OS=Thermotoga petr... [more]
GLYA_THEMA6.466e-2339.19Serine hydroxymethyltransferase OS=Thermotoga mari... [more]
GLYA_PETMO6.466e-2340.91Serine hydroxymethyltransferase OS=Petrotoga mobil... [more]
GLYA_DESAP6.466e-2346.62Serine hydroxymethyltransferase OS=Desulforudis au... [more]
GLYA_RHOP58.445e-2348.72Serine hydroxymethyltransferase OS=Rhodopseudomona... [more]
GLYA_RHOP28.445e-2348.33Serine hydroxymethyltransferase OS=Rhodopseudomona... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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