CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_PROA2 (Serine hydroxymethyltransferase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=glyA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23
Identity = 59/124 (47.58%), Postives = 73/124 (58.87%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 375
            H I A AVA  +A  P FK YA QV+ANA A+        Y++V+GGT+NHL+L DLR   +TG   E L     ITVNKN V F D S     G+RIGTPAMT+RG+ E   E I   + R +
Sbjct:  282 HIIAAKAVAFGEALQPEFKEYAVQVRANAAAMAQKFISLDYNIVSGGTKNHLMLIDLRNKNVTGKVAENLLHEAGITVNKNMVPFDDKSPFVTSGIRIGTPAMTTRGMTESHAEAIVSLIDRVI 405          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_METPE (Serine hydroxymethyltransferase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=glyA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23
Identity = 65/167 (38.92%), Postives = 89/167 (53.29%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDM 504
            H I   AV  K+A  P+FK Y++QV  NA AL   L   G  LV+GGT+NHL+L DL   GLTG + E       ITVNKN +  ++ S     G+RIGTPA+TSRG+ E +  QIGE++ R +                  K + +   I A+K +V   AS + +
Sbjct:  262 HTIAGKAVCFKEALQPSFKQYSRQVVKNAQALAETLGEAGLRLVSGGTDNHLILIDLSNRGLTGLEAEVALGKAGITVNKNTIPNENRSPFVTSGLRIGTPAVTSRGMKEDEMHQIGEYIIRVL------------------KDIQDEATISAVKNEVTALASRYSL 410          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_HYPME (Serine hydroxymethyltransferase OS=Hyphomicrobium methylovorum GN=glyA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23
Identity = 57/120 (47.50%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVA  +A  P FK Y KQV  NA ALG  L   G++LV+GGT+ HLVL DLRP  LTG K EK     NIT NKN + F     +   G+R+G+PA T+RG    +F++IG  +
Sbjct:  278 HVIAGKAVAFGEALRPDFKVYIKQVMDNARALGEVLVQNGFALVSGGTDTHLVLVDLRPKKLTGTKAEKALGRANITCNKNGIPFDPEKPMVTSGIRLGSPAGTTRGFGVAEFQEIGRLI 397          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_BORRA (Serine hydroxymethyltransferase OS=Borrelia recurrentis (strain A1) GN=glyA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23
Identity = 63/168 (37.50%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMP 507
            H I   AVA K+A    FK Y  +V  N  A+  Y   +G  +V+GGT+NHL L DL  LG+TG   EK+ +  NIT+NKNA+ F   +     G+RIG PA+TSRGL   D  ++  F+ RA+                      +  ++  +K +V  F SSFDMP
Sbjct:  269 HVIAGKAVAFKEALNKEFKDYISRVIENTKAMAEYFISEGLRIVSGGTDNHLFLVDLSGLGITGADAEKILESVNITLNKNAIPFDSKNPSVASGIRIGAPAITSRGLNRDDSIKVAHFIIRALKTK-------------------STDELRKIKQEVIGFISSFDMP 417          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_BORDL (Serine hydroxymethyltransferase OS=Borrelia duttonii (strain Ly) GN=glyA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23
Identity = 63/168 (37.50%), Postives = 87/168 (51.79%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMP 507
            H I   AVA K+A    FK Y  +V  N  A+  Y   +G  +V+GGT+NHL L DL  LG+TG   EK+ +  NIT+NKNA+ F   +     G+RIG PA+TSRGL   D  ++  F+ RA+                      +  ++  +K +V  F SSFDMP
Sbjct:  269 HVIAGKAVAFKEALNKEFKDYISRVIENTKAMAEYFISEGLRIVSGGTDNHLFLVDLSGLGITGADAEKILESVNITLNKNAIPFDSKNPSVASGIRIGAPAITSRGLNRDDSIKVAHFIIRALKTK-------------------STDELRKIKQEVIGFISSFDMP 417          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_ALKMQ (Serine hydroxymethyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=glyA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23
Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQI 351
            H I A AVA K+A  P FKAY +QV  NA ALG  L  +G+ LV+ GT+ HL+L DLR   +TG   E+L D   ITVNKN + F   S     G+RIGTPA+T+RG+ E++ ++I
Sbjct:  263 HVIAAKAVAFKEALEPGFKAYQEQVIKNAKALGEELKKQGFDLVSDGTDTHLLLIDLRNKNITGKDAERLFDEVGITVNKNTIPFDPQSPFVTSGIRIGTPAVTTRGMKEEEMKKI 378          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_ACIBL (Serine hydroxymethyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glyA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23
Identity = 54/117 (46.15%), Postives = 75/117 (64.10%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 354
            H I A AV  K+A  P+FK YA QV ANA  L   L  +G+ +++GGT+ HL+L D+   G+ G++ EK      ITVNKNA+ F  +  + P GVRIGTPA+T+RG+ E +  Q+G
Sbjct:  266 HIIAAKAVCFKEAMEPSFKDYANQVVANAKVLAQSLADQGFRIISGGTDTHLMLIDVFAAGMLGSEAEKALGEAGITVNKNAIPFDTNPPMKPSGVRIGTPALTTRGMKEPEMRQVG 382          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA2_RALSO (Serine hydroxymethyltransferase 2 OS=Ralstonia solanacearum GN=glyA2 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23
Identity = 58/120 (48.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 363
            H I   AVA  +A  P FK Y   V ANA ALG  L   G  LVTGGT+NHL+L DLRP GL G +VE+  +   IT NKN + F         G+R+GTPA T+RG    +FEQIG  +
Sbjct:  270 HVIAGKAVAFGEALKPEFKTYIDSVLANAKALGEVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGTQVEQALERAGITCNKNGIPFDTEKPTITSGIRLGTPAATTRGFGVAEFEQIGRLI 389          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_SILST (Serine hydroxymethyltransferase OS=Silicibacter sp. (strain TM1040) GN=glyA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.103e-22
Identity = 56/124 (45.16%), Postives = 75/124 (60.48%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 375
            H I   A A  +A  P FK+Y KQV+ANAVAL + L   G  +VTGGT+ H++L DLRP G+TGN V+K     +IT NKN + F         G+R+GTPA T+RG  E++F +I   +   V
Sbjct:  273 HVIAGKAAAFGEALKPEFKSYQKQVRANAVALADELIKGGLDIVTGGTDTHVMLVDLRPKGVTGNIVDKALGRAHITTNKNGIPFDPEKPTVTSGIRLGTPAGTTRGFGEEEFREIARLIVEVV 396          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYA_NATTJ (Serine hydroxymethyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glyA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.103e-22
Identity = 59/139 (42.45%), Postives = 85/139 (61.15%), Query Frame = 1
Query:    7 HQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLK 420
            H I + AV+ ++A +  FK Y KQV  NA  L + L   GY LV GG++NHL+L DL+  G+TG K E++ D  +ITVNKNAV  D        G+R+GTPA+T+RG  E + +++ + L + +T  LE Q+   K  K
Sbjct:  261 HVIASKAVSFQEALSSEFKNYQKQVIKNASVLADELNNLGYDLVAGGSDNHLMLVDLQKKGVTGKKAERVLDDVHITVNKNAVPNDPEGPFVTSGLRLGTPAVTTRGFAEDEIKEVAQLLDKVIT-GLEDQENLEKCKK 398          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PROA28.445e-2347.58Serine hydroxymethyltransferase OS=Prosthecochlori... [more]
GLYA_METPE8.445e-2338.92Serine hydroxymethyltransferase OS=Methanosphaerul... [more]
GLYA_HYPME8.445e-2347.50Serine hydroxymethyltransferase OS=Hyphomicrobium ... [more]
GLYA_BORRA8.445e-2337.50Serine hydroxymethyltransferase OS=Borrelia recurr... [more]
GLYA_BORDL8.445e-2337.50Serine hydroxymethyltransferase OS=Borrelia dutton... [more]
GLYA_ALKMQ8.445e-2349.14Serine hydroxymethyltransferase OS=Alkaliphilus me... [more]
GLYA_ACIBL8.445e-2346.15Serine hydroxymethyltransferase OS=Acidobacteria b... [more]
GLYA2_RALSO8.445e-2348.33Serine hydroxymethyltransferase 2 OS=Ralstonia sol... [more]
GLYA_SILST1.103e-2245.16Serine hydroxymethyltransferase OS=Silicibacter sp... [more]
GLYA_NATTJ1.103e-2242.45Serine hydroxymethyltransferase OS=Natranaerobius ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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