CK740014

Overview
NameCK740014
Unique NameCK740014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYA_HYPME (Serine hydroxymethyltransferase OS=Hyphomicrobium methylovorum GN=glyA PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 4.484e-11
Identity = 25/42 (59.52%), Postives = 27/42 (64.29%), Query Frame = 1
Query:  106 ALSPGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV 231
            AL  GGT+ HLVL DLRP  LTG K EK     NIT NKN +
Sbjct:  319 ALVSGGTDTHLVLVDLRPKKLTGTKAEKALGRANITCNKNGI 360          

HSP 2 Score: 36.5798 bits (83), Expect = 4.484e-11
Identity = 19/38 (50.00%), Postives = 23/38 (60.53%), Query Frame = 3
Query:    3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116
            VA  +A  P FK Y KQV  NA ALG  L   G++LV+
Sbjct:  285 VAFGEALRPDFKVYIKQVMDNARALGEVLVQNGFALVS 322          
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 5.807e-11
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1
Query:  121 GTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264
            GT++H+VL  LR  G+ G +VE +C+  NI +NKN++ GD SAL PGG
Sbjct:  344 GTDSHMVLVSLREKGVDGARVEHVCEKINIALNKNSIPGDKSALVPGG 391          

HSP 2 Score: 29.6462 bits (65), Expect = 5.807e-11
Identity = 16/37 (43.24%), Postives = 20/37 (54.05%), Query Frame = 3
Query:    6 ALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116
            ALKQA+TP F+ Y + V  NA  L        Y LV+
Sbjct:  306 ALKQATTPEFREYQELVLKNAKVLETEFKKLNYRLVS 342          
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYA_DICTD (Serine hydroxymethyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=glyA PE=3 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 7.564e-11
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1
Query:  109 LSPGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV 231
            L  GGT+NHL+L DLR  G+TG + EK  +   ITVNKNA+
Sbjct:  303 LVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAI 343          

HSP 2 Score: 36.5798 bits (83), Expect = 7.564e-11
Identity = 18/38 (47.37%), Postives = 23/38 (60.53%), Query Frame = 3
Query:    3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116
            VA K+A +P FK Y KQ+  NA A+   L   GY LV+
Sbjct:  268 VAFKEAMSPEFKEYQKQIVLNAKAMAEELIKLGYRLVS 305          
The following BLAST results are available for this feature:
BLAST of CK740014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
GLYA_HYPME4.484e-1159.52Serine hydroxymethyltransferase OS=Hyphomicrobium ... [more]
GLYC_ASHGO5.807e-1152.08Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYA_DICTD7.564e-1156.10Serine hydroxymethyltransferase OS=Dictyoglomus tu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6508 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740014 ID=CK740014; Name=CK740014; organism=Citrus sinensis; type=EST; length=264bp
CTGTTGCCCTGAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCGAAA
CAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAAGGG
ATACAGCCTTGTCACCTGGTGGAACTGAGAACCACCTTGTTCTCTGGGAT
CTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGACCT
TTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGCCT
TGGCCCCTGGAGGA
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