CK740014
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.787e-23 Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 1 Query: 109 LSPGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264 L GT+NHL+LWDLRP LTGNK EK D+ NITVNKNAV GD++A++PGG Sbjct: 331 LVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGG 382 HSP 2 Score: 48.521 bits (114), Expect = 3.787e-23 Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 3 Query: 3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116 VALK+A + FK YA QVK NA A+GN L KGY LVT Sbjct: 296 VALKEADSQEFKEYALQVKKNAAAIGNALMNKGYKLVT 333
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 2.509e-17 Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1 Query: 97 RDTALSPGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264 R +L GGT+NHLVL DLRP GL G + E++ +L +IT NKN GD SA+ PGG Sbjct: 368 RGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGG 423 HSP 2 Score: 43.5134 bits (101), Expect = 2.509e-17 Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 3 Query: 3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116 VALKQA TP F+ Y+ Q+ NA A+ N L +GYSLV+ Sbjct: 337 VALKQACTPMFREYSLQILKNAQAMANALLERGYSLVS 374
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 7.058e-17 Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = 1 Query: 31 HSRPMRNKSRPMQLHLGTT*RARDTALSPGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264 +++ +R S+ M G + R +L GT+NHLVLWDLRP G+TG+K+EK CD +ITVNKNAV+GD++A+APGG Sbjct: 332 YTKQVRRNSQTM----GEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGG 405
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2) HSP 1 Score: 64.3142 bits (155), Expect = 9.314e-17 Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1 Query: 97 RDTALSPGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264 R +L GGT+NHLVL DLRP GL G + E++ +L +IT NKN GD SA+ PGG Sbjct: 368 RGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGG 423 HSP 2 Score: 41.5874 bits (96), Expect = 9.314e-17 Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 3 Query: 3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116 VALKQA TP F+ Y+ QV NA A+ + L +GYSLV+ Sbjct: 337 VALKQACTPMFREYSLQVLKNARAMADALLERGYSLVS 374
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3) HSP 1 Score: 64.3142 bits (155), Expect = 9.314e-17 Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1 Query: 97 RDTALSPGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264 R +L GGT+NHLVL DLRP GL G + E++ +L +IT NKN GD SA+ PGG Sbjct: 368 RGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGG 423 HSP 2 Score: 41.5874 bits (96), Expect = 9.314e-17 Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 3 Query: 3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116 VALKQA TP F+ Y+ QV NA A+ + L +GYSLV+ Sbjct: 337 VALKQACTPMFREYSLQVLKNARAMADALLERGYSLVS 374
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 3.452e-16 Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 Query: 118 GGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264 GGT+NHLVL DL+P G+ G++VE++ +L + NKN V GD SAL PGG Sbjct: 386 GGTDNHLVLIDLKPQGIDGSRVERVLELVGVAANKNTVPGDKSALTPGG 434 HSP 2 Score: 40.0466 bits (92), Expect = 3.452e-16 Identity = 23/44 (52.27%), Postives = 27/44 (61.36%), Query Frame = 3 Query: 3 VALKQASTPAFKAYAKQVKANAVALGNYL------TGKGYSLVT 116 VALKQA TP F+AY QV ANA AL L G GY++V+ Sbjct: 342 VALKQAQTPEFRAYQSQVLANATALAARLGEPKDKNGLGYTIVS 385
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2) HSP 1 Score: 62.7734 bits (151), Expect = 9.870e-16 Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 Query: 121 GTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264 GT++H+VL DLRP+G+ G +VE L + NIT NKNAV GD SAL PGG Sbjct: 345 GTDSHMVLVDLRPIGVDGARVEFLLEQINITCNKNAVPGDKSALTPGG 392 HSP 2 Score: 39.6614 bits (91), Expect = 9.870e-16 Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 3 Query: 3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116 VALKQA++P FK Y ++V ANA AL L GY LV+ Sbjct: 306 VALKQAASPEFKEYQQKVVANAKALEKKLKELGYKLVS 343
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 2.163e-15 Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 Query: 109 LSPGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264 L GGTENHLVL +L+ G+ G++VEK+ +L +I NKN V GD SA+ PGG Sbjct: 378 LVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGG 429 HSP 2 Score: 40.817 bits (94), Expect = 2.163e-15 Identity = 19/38 (50.00%), Postives = 27/38 (71.05%), Query Frame = 3 Query: 3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116 VALKQA+TP ++AY +QV +N+ L+ KGY LV+ Sbjct: 343 VALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVS 380
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3) HSP 1 Score: 55.8398 bits (133), Expect = 2.815e-15 Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 Query: 118 GGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264 GG++NHL+L DLR G G + EK+ + C+I NKN GD SAL P G Sbjct: 352 GGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSG 400 HSP 2 Score: 45.0542 bits (105), Expect = 2.815e-15 Identity = 23/38 (60.53%), Postives = 26/38 (68.42%), Query Frame = 3 Query: 3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116 VALKQA TP F+AY +QV AN AL L G GY +VT Sbjct: 314 VALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVT 351
BLAST of CK740014 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3) HSP 1 Score: 55.8398 bits (133), Expect = 2.815e-15 Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 Query: 118 GGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 264 GG++NHL+L DLR G G + EK+ + C+I NKN GD SAL P G Sbjct: 352 GGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSG 400 HSP 2 Score: 45.0542 bits (105), Expect = 2.815e-15 Identity = 23/38 (60.53%), Postives = 26/38 (68.42%), Query Frame = 3 Query: 3 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 116 VALKQA TP F+AY +QV AN AL L G GY +VT Sbjct: 314 VALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVT 351 The following BLAST results are available for this feature:
BLAST of CK740014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 33
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Sequences
The
following sequences are available for this feature:
EST sequence >CK740014 ID=CK740014; Name=CK740014; organism=Citrus sinensis; type=EST; length=264bpback to top |