CK740073

Overview
NameCK740073
Unique NameCK740073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.369e-21
Identity = 55/128 (42.97%), Postives = 71/128 (55.47%), Query Frame = 2
Query:  305 RLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQG-SKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 685
            R+  E   L+     GI A P+E N   +   I G SKD+ FEG  ++  L    +YP   PKV+F T  +HPNVD    I LDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +   + W   E
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNE 134          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.369e-21
Identity = 56/146 (38.36%), Postives = 77/146 (52.74%), Query Frame = 2
Query:  293 SVLKRLQSELMALMMSGDSGISAFP-EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ-------------DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEE 688
            + LKRL +E   L ++   GI A P  E+N F W+  I G +DT FE   +   LSFP DYP  PPK++F    FHPN+   G +C+ IL              ++WS    V  ILLS+ S+L EPN  S  N  A+++W +  E
Sbjct:    4 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDRE 149          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.369e-21
Identity = 56/146 (38.36%), Postives = 77/146 (52.74%), Query Frame = 2
Query:  293 SVLKRLQSELMALMMSGDSGISAFP-EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ-------------DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEE 688
            + LKRL +E   L ++   GI A P  E+N F W+  I G +DT FE   +   LSFP DYP  PPK++F    FHPN+   G +C+ IL              ++WS    V  ILLS+ S+L EPN  S  N  A+++W +  E
Sbjct:    4 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDRE 149          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.369e-21
Identity = 56/146 (38.36%), Postives = 77/146 (52.74%), Query Frame = 2
Query:  293 SVLKRLQSELMALMMSGDSGISAFP-EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ-------------DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEE 688
            + LKRL +E   L ++   GI A P  E+N F W+  I G +DT FE   +   LSFP DYP  PPK++F    FHPN+   G +C+ IL              ++WS    V  ILLS+ S+L EPN  S  N  A+++W +  E
Sbjct:    4 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDRE 149          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.369e-21
Identity = 56/146 (38.36%), Postives = 77/146 (52.74%), Query Frame = 2
Query:  293 SVLKRLQSELMALMMSGDSGISAFP-EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ-------------DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEE 688
            + LKRL +E   L ++   GI A P  E+N F W+  I G +DT FE   +   LSFP DYP  PPK++F    FHPN+   G +C+ IL              ++WS    V  ILLS+ S+L EPN  S  N  A+++W +  E
Sbjct:    4 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDRE 149          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 57/152 (37.50%), Postives = 77/152 (50.66%), Query Frame = 2
Query:  287 TQSVLKRLQSELMALMMSGDSGISAFPE-EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            +++  KRL  EL  L+     GI A P+ E+NIF W   IQG  DT +    +   L FP DYP  PPK+ F     HPN+   G +C+ IL             +++WS    V  ILLS+ S+L EPNI S  N  A  LW  N+ E+ +
Sbjct:    2 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFER 153          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 52/148 (35.14%), Postives = 86/148 (58.11%), Query Frame = 2
Query:  296 VLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD-------------KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            +LK+  +++  + + G S  +   ++++I+ W+  + G  DT++EG  ++  L FP DYP KPPK+KF +  +HPN+D  GN+C+ IL D             +W   + V TILLS+ S+L +PN  SP N  AA++   N  E++K
Sbjct:    7 LLKKQLADMRRVPVDGFS--AGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKK 152          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  305 RLQSELMALMMSGDS-GISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIY-GNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ 667
            R+Q EL     + DS GI   P+ DN+    GTI G   T +EG  +++ ++ P+ YPF+PPK++F T  +HPN+    G ICLDIL+D+WS A  ++T L+SIQ+LL  P    P ++  A+
Sbjct:    6 RIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAE 128          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.620e-20
Identity = 50/129 (38.76%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEE 688
            KR+Q E+  L +      SA P+ DN++ W  TI G   T +EG  + L + FP+DYPFKPPK+ F+T  +H NVD  G++ ++IL+D WS A  +  +L +I+S+  +P   SP     A+L+    E
Sbjct:   39 KRIQREMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDRE 167          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.468e-20
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  377 NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDK--WSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            N+F W+  I G KDT++EG  YR+ + F +D+P  PPK KFE   FHPNV   G +CL +L +   W  +  ++ +L+ IQ LL  PNI  P  ++A Q++  N+ EY K
Sbjct:   37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEK 146          
The following BLAST results are available for this feature:
BLAST of CK740073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UE2NL_HUMAN2.369e-2142.97Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UB2G2_PONAB2.369e-2138.36Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE2.369e-2138.36Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN2.369e-2138.36Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G2_BOVIN2.369e-2138.36Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBC7_YEAST3.094e-2137.50Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC7_CAEEL2.620e-2035.14Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC27_ARATH2.620e-2041.46Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
COP10_ARATH2.620e-2038.76Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBC9_CAEEL4.468e-2041.82SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740073 ID=CK740073; Name=CK740073; organism=Citrus sinensis; type=EST; length=700bp
AACACTCTCTGAAGAAGAAGAGAAGATCAATAAAACCCTAATTCGTTCTC
TTCTTCTTCTTCTTCTTCTCATTGTCACTGCAATTGAGCAATCCGACAGC
GTTTTCTTGCCCTTTCTTGATCTGGGTTATTGAGTTTTCTTTGTTTGAAT
CAAGAAACAAAGAAGAAAGAAAAATAATACAAAAGTTATGGCTACAGTTA
ACGGGTACCAAGGCAATACTCCGGTGGCCGCTTCGACAACGGCAACAGCA
CCGAAACAGCCCGTCAACACTTTAAAGACTGTGGATACGCAATCTGTGCT
TAAAAGGCTGCAATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTG
GGATATCTGCATTCCCGGAGGAGGATAACATATTCTGCTGGAAAGGGACG
ATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTC
CCTTTCATTTCCCAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCG
AAACCGGCTGCTTCCACCCCAATGTTGATATCTACGGCAATATTTGCTTG
GACATTCTCCAGGATAAATGGTCATCAGCTTATGATGTGAGAACCATTCT
GCTATCGATCCAGTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAA
ACAGCCAGGCAGCACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATG
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