CK740073

Overview
NameCK740073
Unique NameCK740073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.462e-18
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = 2
Query:  389 WKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDK--WSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE-EYRK 697
            WK  I G   T +EG  Y+L+++FP +YP +PPK +F    FHPNV   G +CL IL ++  W  A  ++ ILL IQ LL +PNI+SP  ++A  ++   + EY K
Sbjct:   41 WKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEK 146          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.462e-18
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  371 EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN 679
            +DN+F W  T  G  D+V+ G ++  SL FP DYPF+PP ++F T  +HPN D  GN+CL IL Q  +  +  +R++L  I  LL EPN   PL +  A+ + N
Sbjct:   33 DDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRN 136          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 54/141 (38.30%), Postives = 75/141 (53.19%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEED-----NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            L RL  E  A       G+ A P ++     N+   +  I G K T +EG  ++L + F +DYP  PPK KFE   FHPNV   G +CL IL++   W  A  ++ ILL IQ LL EPNI  P  ++A  ++  ++ EY K
Sbjct:    6 LSRLAQERKAWRKDHPLGLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEK 146          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 43/106 (40.57%), Postives = 69/106 (65.09%), Query Frame = 2
Query:  371 EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 685
            ++NIF WK  I+G +++++E   + L +   NDYP+  PKVKF T   H NV+  G+ICL+IL +D W+++ ++ +I+ SI  LL +PN   P NS+ A L+ N +
Sbjct:   33 DENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDK 138          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.134e-18
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  296 VLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEY 691
            +++R+  E+  L      GI   P E++I   +  I+G + T + G  +R+ L    D+P  PPK  F T  FHPNV   G IC+++L+  W +   +R +LL+I+ LL  PN  S LN +A + L  N EEY
Sbjct:   12 IIRRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 49/136 (36.03%), Postives = 76/136 (55.88%), Query Frame = 2
Query:  305 RLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL----QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKM 700
            RL+ EL  L +    GI+ + E+D +   +  I G  +T +E   + L +  P  YPF+PP+V+F T  +HPN+D  G ICLDIL    +  W  + ++ T+L SIQ L+ EPN   PL +      S++ +Y K+
Sbjct:    6 RLKKELHMLAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADI----SSEFKYNKI 137          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 45/129 (34.88%), Postives = 82/129 (63.57%), Query Frame = 2
Query:  308 LQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIY-GNICLDILQD--KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 685
            LQ +   L  +   GI+A P  +++  W+  I+G +++V++G  ++L++ F ++Y + PP VKF T  FHPNVD + G  C+D L +  KW++ Y + +ILL++Q +L  P + +P+N +AA++ +  E
Sbjct:    9 LQRDFYDLKENNYKGITARPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILTKDE 137          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL----QDKWSSAYDVRTILLSIQSLLGEPNISSPL 649
            + RL+ EL  L      G+  +  E N+   +  I G   + +EG  + L +  P  YPF+PPK++F T  +HPN+D  G ICLDIL    +  W  A ++ T+L SIQ L+ EPN   PL
Sbjct:    4 VSRLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPL 124          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  296 VLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEY 691
            +++++  E+  L      GI   P E++I   +  I+G + T + G  +R+ L    D+P  PPK  F T  FHPNV   G IC+++L+  W +   +R +LL+I+ LL  PN  S LN +A + L  N EEY
Sbjct:   12 IIRQVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 48/133 (36.09%), Postives = 74/133 (55.64%), Query Frame = 2
Query:  296 VLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEY 691
            V++++  E+  L      GI   P E++I   + +I+G + T + G  +R+ L    D+P  PPK  F T  FHPNV   G IC+++L+  W +   +R +LL+I+ LL  PN  S LN +A + L  N EEY
Sbjct:   12 VIRQVYKEVSTLTPDPPEGIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
The following BLAST results are available for this feature:
BLAST of CK740073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC9_SCHPO5.462e-1842.45SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC14_SCHPO5.462e-1842.31Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC9_PAGMA7.134e-1838.30SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC1_MIMIV7.134e-1840.57Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UB2SB_XENLA7.134e-1836.09Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]
UBE2T_MOUSE9.317e-1836.03Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBE2U_MACFA1.589e-1734.88Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]
UBE2T_XENLA1.589e-1738.02Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBE2S_XENTR1.589e-1735.34Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UBE2S_RANCA1.589e-1736.09Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740073 ID=CK740073; Name=CK740073; organism=Citrus sinensis; type=EST; length=700bp
AACACTCTCTGAAGAAGAAGAGAAGATCAATAAAACCCTAATTCGTTCTC
TTCTTCTTCTTCTTCTTCTCATTGTCACTGCAATTGAGCAATCCGACAGC
GTTTTCTTGCCCTTTCTTGATCTGGGTTATTGAGTTTTCTTTGTTTGAAT
CAAGAAACAAAGAAGAAAGAAAAATAATACAAAAGTTATGGCTACAGTTA
ACGGGTACCAAGGCAATACTCCGGTGGCCGCTTCGACAACGGCAACAGCA
CCGAAACAGCCCGTCAACACTTTAAAGACTGTGGATACGCAATCTGTGCT
TAAAAGGCTGCAATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTG
GGATATCTGCATTCCCGGAGGAGGATAACATATTCTGCTGGAAAGGGACG
ATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTC
CCTTTCATTTCCCAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCG
AAACCGGCTGCTTCCACCCCAATGTTGATATCTACGGCAATATTTGCTTG
GACATTCTCCAGGATAAATGGTCATCAGCTTATGATGTGAGAACCATTCT
GCTATCGATCCAGTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAA
ACAGCCAGGCAGCACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATG
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