CK740073

Overview
NameCK740073
Unique NameCK740073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 43/125 (34.40%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  362 FPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICL------------DILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            F ++ N+F W+ TI G  +T+++G  +   +SFP +YP  PP V+F +  +HPNV   G +C+            ++  ++W+  + V +I+LSI S+L  PN  SP N +AA+ W   Q+E++K
Sbjct:   31 FVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKK 155          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17
Identity = 46/129 (35.66%), Postives = 73/129 (56.59%), Query Frame = 2
Query:  296 VLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQ 682
            +++++  E++ L      G+  FP E +I   + TI+G   T +EG ++++ LS   D+P  PPK  F T  FHPNV   G IC++ L+  W +   ++ ILL+I+ LL  PN  S LN +A +L   Q
Sbjct:   14 IIRQVAKEVLDLANHPPEGVKVFPNEQDITDVQATIEGPGGTPYEGGQFKIKLSLGKDFPQTPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKADLGLKHILLTIKCLLIYPNPESALNEEAGKLLLEQ 142          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 46/110 (41.82%), Postives = 61/110 (55.45%), Query Frame = 2
Query:  377 NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDK--WSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            N++ W   I G   T +EG  Y L + F  DYP KPPK +F    FHPNV   G +CL IL ++  W  +  ++T+LL IQ LL  PN  SP       L+ +N+EEY K
Sbjct:   37 NLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDK 146          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 44/132 (33.33%), Postives = 79/132 (59.85%), Query Frame = 2
Query:  305 RLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAA-QLWSNQEEYRK 697
            R+Q +L  L +      + FP  ++I  ++ T++  +   ++G E+R S     ++P +PPKVK     +HPN+D+ GN+CL+IL++ W     +  +++ +Q L  EPN S PLN  AA Q+ +N+EE+++
Sbjct:   28 RVQKDLSELSLPSTMK-THFPSAEDIMNFELTVRPDEG-FYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFKR 157          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 53/141 (37.59%), Postives = 75/141 (53.19%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEED-----NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWS-NQEEYRK 697
            L+RLQ E          G  A P +      ++  W+  I G + T + G  Y +++ +PN+YP KPPKVKF  G +HPNV   G ICL IL +   W  A  ++ I+L +Q LL  PN +SP    A + +S N+ EY K
Sbjct:    6 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDK 146          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC8_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC8 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 50/125 (40.00%), Postives = 74/125 (59.20%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDI-YGNICLDILQDKWSSAYDVRTIL-LSIQSLLGEPNISSPLNSQAAQL 670
            +R+++++M L+MS D  +    +    F  K    G KDT +E   +RL +  P++YP+K P + F    FHPN+DI  G+ICLD++   WS  YD+  I+   I  LL EPN S PLN++AA L
Sbjct:    6 RRIETDVMKLLMS-DHQVDLINDSMQEFHVK--FLGPKDTPYENGVWRLHVELPDNYPYKSPSIGFVNKIFHPNIDIASGSICLDVINSTWSPLYDLINIVEWMIPGLLKEPNGSDPLNNEAATL 127          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2S_DICDI (Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium discoideum GN=ube2s PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 50/135 (37.04%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  296 VLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEYRK 697
            V+KR+  EL  L  S   GI+  P E++I   +  + G   T +EG  ++  L   +D+P  PPK  F T  FHPNV   G IC++ L+  W+    ++ ILL+I+ LL  PN  S LN  A++ L  N ++Y K
Sbjct:   10 VIKRVVKELKELNSSTLEGITLLPCEEDITNIEAVVTGPAGTPYEGGYFKARLILSSDFPRSPPKANFITKIFHPNVSKKGEICVNTLKKDWTEDLGLKHILLTIKCLLIVPNAESSLNEDASRLLLENYDDYCK 144          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 49/129 (37.98%), Postives = 72/129 (55.81%), Query Frame = 2
Query:  293 SVLKRLQSELMALMMSGDSGISAF-PEED-NIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL 670
            S +KRL  E  +      SG+    P  D ++F WK  I+G  +T +EG ++ L +     YP  PP V F+T   HPN+    G +C+DIL+  WS A+ +++  L+I SLL   + SSPLN  AA+L
Sbjct:    3 SSIKRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKL 131          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  296 VLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEY 691
            +++R+  E+  L      GI   P E++I   +  I+G + T +    +R+ L    D+P  PPK  F T  FHPNV   G IC+++L+  W +   +R +LL+I+ LL  PN  S LN +A + L  N EEY
Sbjct:   12 IIRRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY 144          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGIS-AFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 673
            K L  EL +L      G      +E +++ W+  I G  +T++EG  ++  + FP DYP+ PP  +F T  +HPN+   G++C+ IL              ++W+   +VRTILLS+ SLL EPN  SP N  A+ ++
Sbjct:   11 KALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMF 148          
The following BLAST results are available for this feature:
BLAST of CK740073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC7_WHEAT2.076e-1734.40Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBE2S_BRAFL2.711e-1735.66Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma... [more]
UBC9_DICDI4.624e-1741.82Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC12_YARLI4.624e-1733.33NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBC9_YEAST6.039e-1737.59SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UBC8_YEAST6.039e-1740.00Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBE2S_DICDI7.887e-1737.04Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium... [more]
UBC16_SCHPO7.887e-1737.98Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UB2SC_XENLA7.887e-1735.34Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]
UB2R2_RABIT7.887e-1734.06Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740073 ID=CK740073; Name=CK740073; organism=Citrus sinensis; type=EST; length=700bp
AACACTCTCTGAAGAAGAAGAGAAGATCAATAAAACCCTAATTCGTTCTC
TTCTTCTTCTTCTTCTTCTCATTGTCACTGCAATTGAGCAATCCGACAGC
GTTTTCTTGCCCTTTCTTGATCTGGGTTATTGAGTTTTCTTTGTTTGAAT
CAAGAAACAAAGAAGAAAGAAAAATAATACAAAAGTTATGGCTACAGTTA
ACGGGTACCAAGGCAATACTCCGGTGGCCGCTTCGACAACGGCAACAGCA
CCGAAACAGCCCGTCAACACTTTAAAGACTGTGGATACGCAATCTGTGCT
TAAAAGGCTGCAATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTG
GGATATCTGCATTCCCGGAGGAGGATAACATATTCTGCTGGAAAGGGACG
ATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTC
CCTTTCATTTCCCAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCG
AAACCGGCTGCTTCCACCCCAATGTTGATATCTACGGCAATATTTGCTTG
GACATTCTCCAGGATAAATGGTCATCAGCTTATGATGTGAGAACCATTCT
GCTATCGATCCAGTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAA
ACAGCCAGGCAGCACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATG
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