CK740073

Overview
NameCK740073
Unique NameCK740073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGIS-AFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 673
            K L  EL +L      G      +E +++ W+  I G  +T++EG  ++  + FP DYP+ PP  +F T  +HPN+   G++C+ IL              ++W+   +VRTILLS+ SLL EPN  SP N  A+ ++
Sbjct:   11 KALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMF 148          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGIS-AFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 673
            K L  EL +L      G      +E +++ W+  I G  +T++EG  ++  + FP DYP+ PP  +F T  +HPN+   G++C+ IL              ++W+   +VRTILLS+ SLL EPN  SP N  A+ ++
Sbjct:   11 KALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMF 148          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = 2
Query:  368 EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEE 688
            +E +++ W+  I G  +T +EG  ++  L FP DYP+ PP  +F T  +HPN+   G++C+ IL              ++W+   +VRTILLS+ SLL EPN  SP N  A+ ++   +E
Sbjct:   34 DEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKE 153          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = 2
Query:  368 EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEE 688
            +E +++ W+  I G  +T +EG  ++  L FP DYP+ PP  +F T  +HPN+   G++C+ IL              ++W+   +VRTILLS+ SLL EPN  SP N  A+ ++   +E
Sbjct:   34 DEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKE 153          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = 2
Query:  305 RLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL----QDKWSSAYDVRTILLSIQSLLGEPNISSPL 649
            RL+ EL  L      GI+ + ++D +   +  I G  +T +E   ++L +  P  YPF+PP+++F T  +HPN+D  G ICLD+L    +  W  + ++ T+L SIQ L+ EPN   PL
Sbjct:    6 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPL 124          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  392 KGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNV-DIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAA 664
            +G I G  DT +EG ++ L +  P  YPF PPKV+F T  +HPN+  + G ICLDIL+D W++A  +RT+LLS+Q+LL       P ++  A
Sbjct:   40 RGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVA 131          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 44/129 (34.11%), Postives = 80/129 (62.02%), Query Frame = 2
Query:  308 LQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIY-GNICLDILQ--DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 685
            L  +   L  +   GI+A P  +++  W+  I+G +++V++G  ++L++ F ++Y + PP VKF T  FHPNVD + G  C+D L   +KW++ Y + +ILL++Q +L  P + +P+N +AA++    E
Sbjct:    9 LHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDE 137          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  296 VLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--------KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ 667
            V + L +E   L+ +          E+NI  W   ++G  DT++EG  ++  ++FP +YP+ PPK+ F +  +HPN+   G +C+ IL           WS A  + TILLS+ SLL EPN  SP N  AA+
Sbjct:    2 VSRFLIAEYRHLIENPSENFKISVNENNITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAK 133          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC21_CAEEL (Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 46/128 (35.94%), Postives = 73/128 (57.03%), Query Frame = 2
Query:  344 DSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKV---------------KFETGCFHPNVDIY-GNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN 679
            ++GI    +E+N+   KG I+G + T + G  + + +  P  YPF+PPKV               KF T  +HPN+    G ICLDIL+DKW+++  +RT+LLS+Q++L  P  S P ++  A+ + N
Sbjct:   38 EAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFIN 165          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  371 EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--------KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKM 700
            E+N+  W   ++G  DT +EG  ++  ++FP +YP++PPK+ F +  +HPN+   G +C+ IL           WS A  + T+LLS+ SL  EPN  SP N  AA      + YRK+
Sbjct:   27 ENNLTEWDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGMTWSPAQKIETVLLSVISLFNEPNTDSPANVDAA------KSYRKL 138          
The following BLAST results are available for this feature:
BLAST of CK740073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UB2R2_MOUSE7.887e-1734.06Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN7.887e-1734.06Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UB2R1_MOUSE7.887e-1735.83Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN7.887e-1735.83Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBE2T_HUMAN1.030e-1636.13Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBCD4_DROME1.030e-1644.57Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBE2U_HUMAN1.345e-1634.11Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBC_ASFB71.757e-1635.61Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC21_CAEEL1.757e-1635.94Probable ubiquitin-conjugating enzyme E2 21 OS=Cae... [more]
UBC_ASFK52.295e-1636.44Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740073 ID=CK740073; Name=CK740073; organism=Citrus sinensis; type=EST; length=700bp
AACACTCTCTGAAGAAGAAGAGAAGATCAATAAAACCCTAATTCGTTCTC
TTCTTCTTCTTCTTCTTCTCATTGTCACTGCAATTGAGCAATCCGACAGC
GTTTTCTTGCCCTTTCTTGATCTGGGTTATTGAGTTTTCTTTGTTTGAAT
CAAGAAACAAAGAAGAAAGAAAAATAATACAAAAGTTATGGCTACAGTTA
ACGGGTACCAAGGCAATACTCCGGTGGCCGCTTCGACAACGGCAACAGCA
CCGAAACAGCCCGTCAACACTTTAAAGACTGTGGATACGCAATCTGTGCT
TAAAAGGCTGCAATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTG
GGATATCTGCATTCCCGGAGGAGGATAACATATTCTGCTGGAAAGGGACG
ATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTC
CCTTTCATTTCCCAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCG
AAACCGGCTGCTTCCACCCCAATGTTGATATCTACGGCAATATTTGCTTG
GACATTCTCCAGGATAAATGGTCATCAGCTTATGATGTGAGAACCATTCT
GCTATCGATCCAGTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAA
ACAGCCAGGCAGCACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATG
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