CK740073

Overview
NameCK740073
Unique NameCK740073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 45/125 (36.00%), Postives = 70/125 (56.00%), Query Frame = 2
Query:  296 VLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL 670
            VL+ +  E+ AL      GI  +P E++I     +I+G + T + G  +R+ L    D+P  PP+  F T  FHPNV   G IC+++L+  W +   +R +LL+I+ LL  PN  S LN +A +L
Sbjct:   12 VLRLVYKEVSALAADPPEGIKIYPSEEDITELHTSIEGPEGTPYAGGVFRMRLVLGKDFPAVPPRGYFLTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKL 136          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = 2
Query:  308 LQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--------KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ 667
            L +E   L+++          EDN+  W   ++G  DT++EG  ++  + FP  YP++PP++ F +  +HPN+   G +C+ IL           WS A  + T+LLS+ SLL EPN  SP N  AA+
Sbjct:    6 LLAEYKNLIVNPSEHFKISVNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAK 133          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 2
Query:  305 RLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL----QDKWSSAYDVRTILLSIQSLLGEPNISSPL 649
            RL+ EL  L      GI+ + + D +   +  I G  +T +E   ++L +  P  YPF+PP+++F T  +HPN+D  G ICLD+L    +  W  + ++ T+L  IQ L+ EPN   PL
Sbjct:    6 RLKRELSLLAAEPPPGITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPL 124          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 44/132 (33.33%), Postives = 69/132 (52.27%), Query Frame = 2
Query:  296 VLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--------KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ 667
            V + L +E   L  +          E+N+  W   ++G  DT++EG  ++  + FP +YP++PP++ F +  +HPN+   G +C+ IL           WS    + TILLS+ SLL EPN  SP N  AA+
Sbjct:    2 VSRFLMAEYRHLTENPSENFKVSVNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGMTWSPVQKIDTILLSVISLLNEPNTDSPANVDAAK 133          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 43/124 (34.68%), Postives = 69/124 (55.65%), Query Frame = 2
Query:  368 EEDNIFCWK-GTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ------------DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAA-QLWSNQEEYRK 697
            ++ NIF W  G +  ++D+++ G  ++  + FP D+PF PP+ +F    +HPNV   G +C+ IL             + WS    V ++L+SI SLL +PNI+SP N  AA     N E+Y++
Sbjct:   35 DDSNIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYKQ 158          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 47/143 (32.87%), Postives = 75/143 (52.45%), Query Frame = 2
Query:  296 VLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQD--------KWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRKM 700
            V + L +E   L+ +          E+++  W   ++G  DT++EG  ++  ++FP +YP+ PP++ F +  +HPN+   G +C+ IL           WS A  + TILLS+ SLL EPN  SP N  AA      + YRK+
Sbjct:    2 VSRFLMAEYRHLIENPSENFKISVNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAA------KSYRKL 138          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  413 KDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAA 664
            ++ V+ G  +R S+ F + YP +PP VK     +HPN+D  GNICL++L++ WS   D++T++L +  L  EPN S PLN QAA
Sbjct:   68 EEGVYRGGHFRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAA 151          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 53/157 (33.76%), Postives = 81/157 (51.59%), Query Frame = 2
Query:  293 SVLKRLQSELMALMMS-GDSG--ISAFP----EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ--------------DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            S L+RL +E   L ++ GD     SA+P    E  +   W        D+++ G   +  + FP+ YP +PP +KF +  FHPN+   G +C+ IL+              DKW+   ++RTI++SI  +L  PNISSP N  A+ ++  N EEY K
Sbjct:   29 SALRRLSNEEERLKIADGDERKLFSAYPRGSMENRDYKVWDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEYIK 185          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  425 FEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL 670
            ++G ++R + +F   YP  PPKV      FHPN+D +G ICL+IL++ WS A D++ I+L + SL  EPN + PLN +AA++
Sbjct:   76 YKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEV 157          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC22_ARATH (Ubiquitin carrier protein E2 22 OS=Arabidopsis thaliana GN=UBC22 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 2
Query:  293 SVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEYRK 697
            +V+K+L  EL +L  S   GI     +++       I+G   T +E   +R+ L+  +D+P  PPK  F T  FHPNV   G IC++ L+  W+ +  +R +L  ++ LL EP   S LN QA + L  N +EY +
Sbjct:   10 NVIKQLAKELKSLDESPPDGIKVVVNDEDFSQICADIEGPVGTPYENGLFRMKLALSHDFPHSPPKGYFMTKIFHPNVASNGEICVNTLKKDWNPSLGLRHVLSVVRCLLIEPFPESALNEQAGKMLLENYDEYAR 145          
The following BLAST results are available for this feature:
BLAST of CK740073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBE2S_DANRE2.997e-1636.00Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]
UBC_ASFM22.997e-1634.38Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBE2T_BOVIN3.914e-1635.29Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBC_ASFP43.914e-1633.33Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC3_YEAST5.112e-1634.68Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBC_ASFWA8.720e-1632.87Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC12_ASHGO1.487e-1544.05NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
Y1A1_ENCCU3.314e-1533.76Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC12_CANGA3.314e-1543.90NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBC22_ARATH4.328e-1534.56Ubiquitin carrier protein E2 22 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740073 ID=CK740073; Name=CK740073; organism=Citrus sinensis; type=EST; length=700bp
AACACTCTCTGAAGAAGAAGAGAAGATCAATAAAACCCTAATTCGTTCTC
TTCTTCTTCTTCTTCTTCTCATTGTCACTGCAATTGAGCAATCCGACAGC
GTTTTCTTGCCCTTTCTTGATCTGGGTTATTGAGTTTTCTTTGTTTGAAT
CAAGAAACAAAGAAGAAAGAAAAATAATACAAAAGTTATGGCTACAGTTA
ACGGGTACCAAGGCAATACTCCGGTGGCCGCTTCGACAACGGCAACAGCA
CCGAAACAGCCCGTCAACACTTTAAAGACTGTGGATACGCAATCTGTGCT
TAAAAGGCTGCAATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTG
GGATATCTGCATTCCCGGAGGAGGATAACATATTCTGCTGGAAAGGGACG
ATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTC
CCTTTCATTTCCCAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCG
AAACCGGCTGCTTCCACCCCAATGTTGATATCTACGGCAATATTTGCTTG
GACATTCTCCAGGATAAATGGTCATCAGCTTATGATGTGAGAACCATTCT
GCTATCGATCCAGTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAA
ACAGCCAGGCAGCACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATG
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