CK740073

Overview
NameCK740073
Unique NameCK740073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  305 RLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN 679
            R+Q ++  L +     I  F + D++  +K  I   +   ++G ++  S      YP  PPKVK ET  +HPN+D+ GN+CL+IL++ W     + +I+  +Q L  EPN   PLN +AA++  N
Sbjct:   33 RIQKDITELNLPKTCEIE-FSDHDDLLNFKLVICPDEG-FYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQN 155          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 49/133 (36.84%), Postives = 66/133 (49.62%), Query Frame = 2
Query:  344 DSGI-SAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKF-------------------ETGCF---HPNVDI-YGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL 670
            D+GI    P ED +F W   I+G   + FE   ++L +  P +YP  PPK+KF                      C+   HPNV+   G ICLDILQ KWS A+ +++ L++I  LL  P   SPLN   A L
Sbjct:   28 DTGIVDLHPLEDGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANL 160          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  305 RLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN 679
            R+Q ++  L +     I  F + D++  +K  I   +   ++G ++  S      YP  PPKVK ET  +HPN+D+ GN+CL+IL++ W     + +I+  +Q L  EPN   PLN +AA++  N
Sbjct:   33 RIQKDINELNLPKTCEIE-FSDHDDLLNFKLVICPDEG-FYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQN 155          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 31/85 (36.47%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  416 DTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL 670
            D +++   ++ +++ P+ YP+ PPKV  +T  +HPN+D+ G++CL+IL+  W    ++ T++  + +L  EPN   PLN  AAQL
Sbjct:  116 DGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQL 200          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2S_NEMVE (Ubiquitin-conjugating enzyme E2 S OS=Nematostella vectensis GN=v1g237158 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15
Identity = 41/125 (32.80%), Postives = 68/125 (54.40%), Query Frame = 2
Query:  296 VLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL 670
            ++K++  E+  L      GI  F  +++I   + +I+G   T +EG  +++ L    D+P  PPK  F T  FHPNV   G IC++ L+  W     ++ +LL+++ LL  PN  S LN +A +L
Sbjct:   15 IIKQVAREIHGLTNDPPEGIKVFSNDEDITDIQASIEGPTGTPYEGGIFKIKLVLGKDFPAAPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKL 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 2
Query:  302 KRLQSELMALMMSG------DSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTILLS-IQSLLGEPNISSPLNSQAAQL 670
            KR + +LM LMMS       + G+  F  E           G KD+++EG  +++ +  P+ YP+K P V F T  +HPNVD + G++CLD++   WS  +D+  +  + +  LL  PN S PLN +AA L
Sbjct:    6 KRREMDLMKLMMSDYKVEMINDGMQEFFVE---------FSGPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAAL 127          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  305 RLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN 679
            R+Q ++  L +     IS F + D++  +K  I   +   ++  ++  S      YP  PPKVK ET  +HPN+D+ GN+CL+IL++ W     + +I+  +Q L  EPN   PLN +AA++  N
Sbjct:   33 RIQKDINELNLPKTCDIS-FSDPDDLLNFKLVICPDEG-FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQN 155          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  305 RLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN 679
            R+Q ++  L +     IS F + D++  +K  I   +   ++  ++  S      YP  PPKVK ET  +HPN+D+ GN+CL+IL++ W     + +I+  +Q L  EPN   PLN +AA++  N
Sbjct:   33 RIQKDINELNLPKTCDIS-FSDPDDLLNFKLVICPDEG-FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQN 155          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  305 RLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSN 679
            R+Q ++  L +     IS F + D++  +K  I   +   ++  ++  S      YP  PPKVK ET  +HPN+D+ GN+CL+IL++ W     + +I+  +Q L  EPN   PLN +AA++  N
Sbjct:   33 RIQKDINELNLPKTCDIS-FSDPDDLLNFKLVICPDEG-FYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQN 155          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14
Identity = 46/131 (35.11%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  302 KRLQSELMALMMSG------DSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTILLS-IQSLLGEPNISSPLNSQAAQL 670
            KR + ++M LMMS       + G+  F  E N         G KD++++G  +++ +  P+ YP+K P V F T  +HPNVD + G++CLD++   WS  +D+  +  + +  LL  PN S PLN +AA L
Sbjct:    6 KRREMDMMKLMMSDYKVETINDGMQEFYVEFN---------GPKDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAAL 127          
The following BLAST results are available for this feature:
BLAST of CK740073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC12_XENLA4.328e-1533.60NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBCX_PICAN5.652e-1536.84Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UBC12_XENTR5.652e-1533.60NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_DICDI5.652e-1536.47NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UBE2S_NEMVE7.382e-1532.80Ubiquitin-conjugating enzyme E2 S OS=Nematostella ... [more]
UBC5_ARATH7.382e-1535.88Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]
UBC12_MOUSE9.642e-1533.60NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN9.642e-1533.60NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN9.642e-1533.60NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBC4_ARATH1.259e-1435.11Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740073 ID=CK740073; Name=CK740073; organism=Citrus sinensis; type=EST; length=700bp
AACACTCTCTGAAGAAGAAGAGAAGATCAATAAAACCCTAATTCGTTCTC
TTCTTCTTCTTCTTCTTCTCATTGTCACTGCAATTGAGCAATCCGACAGC
GTTTTCTTGCCCTTTCTTGATCTGGGTTATTGAGTTTTCTTTGTTTGAAT
CAAGAAACAAAGAAGAAAGAAAAATAATACAAAAGTTATGGCTACAGTTA
ACGGGTACCAAGGCAATACTCCGGTGGCCGCTTCGACAACGGCAACAGCA
CCGAAACAGCCCGTCAACACTTTAAAGACTGTGGATACGCAATCTGTGCT
TAAAAGGCTGCAATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTG
GGATATCTGCATTCCCGGAGGAGGATAACATATTCTGCTGGAAAGGGACG
ATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTC
CCTTTCATTTCCCAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCG
AAACCGGCTGCTTCCACCCCAATGTTGATATCTACGGCAATATTTGCTTG
GACATTCTCCAGGATAAATGGTCATCAGCTTATGATGTGAGAACCATTCT
GCTATCGATCCAGTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAA
ACAGCCAGGCAGCACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATG
back to top