CK740073

Overview
NameCK740073
Unique NameCK740073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 43/142 (30.28%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFP-EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ-DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWS--------NQEEYRK 697
            +RL  EL  +   G         +E N+  W+G I        +G  +R+ ++FP +YPFKPPK+ F+T  +HPN+D  G +CL ++  + W  A     ++ S+ +L+ +P    PL +  A+ +S        N EE+ K
Sbjct:    5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGA-FRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTK 145          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 43/142 (30.28%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFP-EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ-DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWS--------NQEEYRK 697
            +RL  EL  +   G         +E N+  W+G I        +G  +R+ ++FP +YPFKPPK+ F+T  +HPN+D  G +CL ++  + W  A     ++ S+ +L+ +P    PL +  A+ +S        N EE+ K
Sbjct:    5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGA-FRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTK 145          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 43/142 (30.28%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFP-EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ-DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWS--------NQEEYRK 697
            +RL  EL  +   G         +E N+  W+G I        +G  +R+ ++FP +YPFKPPK+ F+T  +HPN+D  G +CL ++  + W  A     ++ S+ +L+ +P    PL +  A+ +S        N EE+ K
Sbjct:    5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGA-FRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTK 145          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14
Identity = 43/142 (30.28%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFP-EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQ-DKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWS--------NQEEYRK 697
            +RL  EL  +   G         +E N+  W+G I        +G  +R+ ++FP +YPFKPPK+ F+T  +HPN+D  G +CL ++  + W  A     ++ S+ +L+ +P    PL +  A+ +S        N EE+ K
Sbjct:    5 RRLMKELEEIRKCGMKNFRNIRVDEANLLTWQGLIVPDNPPYDKGA-FRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTK 145          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 41/125 (32.80%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTIL-LSIQSLLGEPNISSPLNSQAAQL 670
            +R+++++M L+MS D  ++     DN+  +     G  +T + G  +++ +  P++YP+K P + F    FHPN+D + G++CLD++   WS  +D+  I  + +  LL  PN S PLN +AA L
Sbjct:    6 RRIETDVMKLLMS-DYEVTLV--NDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAAL 127          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 40/130 (30.77%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  305 RLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQ-LWSNQEEY 691
            R+Q ++  L +        FP+ +++  +K  I   +    +G  +  +    ++YP +PPKVK  T  +HPN+D+ GN+CL+IL++ W+   ++ +I+  +Q L  EPN   PLN +AA  L +N+ ++
Sbjct:   30 RIQKDINELNLPNTCATD-FPDPNDLLNFKLIISPDEGFYRDG-RFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQF 157          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 45/124 (36.29%), Postives = 63/124 (50.81%), Query Frame = 2
Query:  305 RLQSELMALMMSGDSGISAFPEEDNIFCWKGT----------IQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDIL----QDKWSSAYDVRTILLSIQSLLGEPN 634
            R+Q EL  L+     G S FP   +     G           I+G +DTV+    + L +  P  YPF+PP V F T  +HPN+D  G ICLDIL    +  W  + ++ T+L S++ LL EPN
Sbjct:   10 RMQKELKLLLSDPPHGAS-FPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPN 132          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 43/125 (34.40%), Postives = 68/125 (54.40%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTILLS-IQSLLGEPNISSPLNSQAAQL 670
            KR + ++M LMMS D  +      D++  +  T  G  D++++G  +++ +  P  YP+K P V F    +HPNVD   G +CLD++   WS  +D+  +  S +  LL  PN S P N +AA L
Sbjct:    6 KRREMDMMKLMMS-DYKVDTV--NDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASL 127          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  425 FEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAA 664
            ++G +++  +   ++YP  PPKVK     +HPN+DI GN+CL+IL+  W+   ++ +IL+ +Q L   PN   PLN +AA
Sbjct:   65 YKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAA 144          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 37/100 (37.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:  407 GSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTILLS-IQSLLGEPNISSPLNSQAAQLWSNQ-EEYRK 697
            G + T +EG  +++ +  P+ YPFK P + F    FHPN+D   G +CLD++   W++ YD+  I  S +  LL  PN   PLN  AA ++ ++ EEY++
Sbjct:   40 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQ 139          
The following BLAST results are available for this feature:
BLAST of CK740073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UB2L3_MOUSE2.148e-1430.28Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN2.148e-1430.28Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN2.148e-1430.28Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UB2L3_PONAB2.805e-1430.28Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UBC8_SCHPO6.249e-1432.80Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UBC12_DROME8.162e-1430.77NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC37_ARATH1.066e-1336.29Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC6_ARATH1.818e-1334.40Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UBC12_SCHPO1.818e-1338.75NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBE2H_MOUSE2.375e-1337.00Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740073 ID=CK740073; Name=CK740073; organism=Citrus sinensis; type=EST; length=700bp
AACACTCTCTGAAGAAGAAGAGAAGATCAATAAAACCCTAATTCGTTCTC
TTCTTCTTCTTCTTCTTCTCATTGTCACTGCAATTGAGCAATCCGACAGC
GTTTTCTTGCCCTTTCTTGATCTGGGTTATTGAGTTTTCTTTGTTTGAAT
CAAGAAACAAAGAAGAAAGAAAAATAATACAAAAGTTATGGCTACAGTTA
ACGGGTACCAAGGCAATACTCCGGTGGCCGCTTCGACAACGGCAACAGCA
CCGAAACAGCCCGTCAACACTTTAAAGACTGTGGATACGCAATCTGTGCT
TAAAAGGCTGCAATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTG
GGATATCTGCATTCCCGGAGGAGGATAACATATTCTGCTGGAAAGGGACG
ATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTC
CCTTTCATTTCCCAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCG
AAACCGGCTGCTTCCACCCCAATGTTGATATCTACGGCAATATTTGCTTG
GACATTCTCCAGGATAAATGGTCATCAGCTTATGATGTGAGAACCATTCT
GCTATCGATCCAGTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAA
ACAGCCAGGCAGCACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATG
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