CK740073

Overview
NameCK740073
Unique NameCK740073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 37/100 (37.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:  407 GSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTILLS-IQSLLGEPNISSPLNSQAAQLWSNQ-EEYRK 697
            G + T +EG  +++ +  P+ YPFK P + F    FHPN+D   G +CLD++   W++ YD+  I  S +  LL  PN   PLN  AA ++ ++ EEY++
Sbjct:   40 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQ 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 37/100 (37.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:  407 GSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTILLS-IQSLLGEPNISSPLNSQAAQLWSNQ-EEYRK 697
            G + T +EG  +++ +  P+ YPFK P + F    FHPN+D   G +CLD++   W++ YD+  I  S +  LL  PN   PLN  AA ++ ++ EEY++
Sbjct:   40 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQ 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 42/130 (32.31%), Postives = 70/130 (53.85%), Query Frame = 2
Query:  278 TVDTQSVLK-RLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAA 664
            TV  QS  + RL  ++  L +     IS    ++++  ++ TI+  +     G  +  S    N YP + PKVK +T  +HPN+D+ GN+CL+IL++ W    ++ T++  +  L  EPN   PLN +AA
Sbjct:   25 TVKKQSAGELRLHKDISELNLPKSCKISFPNGKNDLMNFEVTIKPDEGYYLSGN-FVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAA 153          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2W_DANRE (Probable ubiquitin-conjugating enzyme E2 W OS=Danio rerio GN=ube2w PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 44/114 (38.60%), Postives = 69/114 (60.53%), Query Frame = 2
Query:  293 SVLKRLQSELMALMMSGDSGISAFPE--EDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKF--ETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLL 622
            S+ KRLQ EL+AL     +G++      ++ I  W   ++G++ TV+EG +++L   F + YPF+ P+V F  E    HP+V   G+ICL IL + WS A  V+++ LSI S+L
Sbjct:    3 SMQKRLQKELLALQNDPPAGMTLNERSVQNTITEWFIDMEGAQGTVYEGEKFQLLFKFSSRYPFESPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISML 116          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 43/125 (34.40%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVD-IYGNICLDILQDKWSSAYDVRTIL-LSIQSLLGEPNISSPLNSQAAQL 670
            KR + +LM LMMS D  +      D +  +     G KD++++G  +++ +     YP+K P + F    +HPNVD + G++CLD++   WS  +D+  I  + +  LL  PN S PLN +AA L
Sbjct:    6 KRREMDLMKLMMS-DYKVDMI--NDGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASL 127          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  449 SLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEE 688
            +L F   YP +PPKV      FHPN+D+ GN+CL+IL++ WS A D+++I+  +  L  EPN + PLN  AA+L    E+
Sbjct:   83 NLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEK 162          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila simulans GN=GD17343 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 39/124 (31.45%), Postives = 63/124 (50.81%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL 670
            ++++  EL  +  +   GI     E ++   +  I G   T +    +R+ L+   D+P  PPK  F T  FHPNV   G IC++ L+  W     ++ ILL+I+ LL  PN  S LN +A ++
Sbjct:   16 IRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKM 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila sechellia GN=GM13299 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 39/124 (31.45%), Postives = 63/124 (50.81%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL 670
            ++++  EL  +  +   GI     E ++   +  I G   T +    +R+ L+   D+P  PPK  F T  FHPNV   G IC++ L+  W     ++ ILL+I+ LL  PN  S LN +A ++
Sbjct:   16 IRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKM 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2S_DROME (Ubiquitin-conjugating enzyme E2 S OS=Drosophila melanogaster GN=CG8188 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 39/124 (31.45%), Postives = 63/124 (50.81%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQL 670
            ++++  EL  +  +   GI     E ++   +  I G   T +    +R+ L+   D+P  PPK  F T  FHPNV   G IC++ L+  W     ++ ILL+I+ LL  PN  S LN +A ++
Sbjct:   16 IRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKM 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 2
Query:  368 EEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDK-WSSAYDVRTILLSIQSLLGEPNISSPLNSQ-AAQLWSNQEEYRKM 700
            EEDN+  W   +   +   +    +RL +SFP +YPF+PP VKF T  +HPNVD  G +CL I+  K W ++     +L ++  L+ +P    P+  + A QL  + E + +M
Sbjct:   28 EEDNVLVWHALLLPERPP-YNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQM 139          
The following BLAST results are available for this feature:
BLAST of CK740073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBE2H_HUMAN2.375e-1337.00Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN2.375e-1337.00Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UB12L_ARATH2.375e-1332.31Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBE2W_DANRE3.102e-1338.60Probable ubiquitin-conjugating enzyme E2 W OS=Dani... [more]
UBC4_WHEAT3.102e-1334.40Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBC12_YEAST3.102e-1343.75NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBE2S_DROSI4.051e-1331.45Ubiquitin-conjugating enzyme E2 S OS=Drosophila si... [more]
UBE2S_DROSE4.051e-1331.45Ubiquitin-conjugating enzyme E2 S OS=Drosophila se... [more]
UBE2S_DROME4.051e-1331.45Ubiquitin-conjugating enzyme E2 S OS=Drosophila me... [more]
UB2L6_BOVIN5.290e-1334.51Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740073 ID=CK740073; Name=CK740073; organism=Citrus sinensis; type=EST; length=700bp
AACACTCTCTGAAGAAGAAGAGAAGATCAATAAAACCCTAATTCGTTCTC
TTCTTCTTCTTCTTCTTCTCATTGTCACTGCAATTGAGCAATCCGACAGC
GTTTTCTTGCCCTTTCTTGATCTGGGTTATTGAGTTTTCTTTGTTTGAAT
CAAGAAACAAAGAAGAAAGAAAAATAATACAAAAGTTATGGCTACAGTTA
ACGGGTACCAAGGCAATACTCCGGTGGCCGCTTCGACAACGGCAACAGCA
CCGAAACAGCCCGTCAACACTTTAAAGACTGTGGATACGCAATCTGTGCT
TAAAAGGCTGCAATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTG
GGATATCTGCATTCCCGGAGGAGGATAACATATTCTGCTGGAAAGGGACG
ATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTC
CCTTTCATTTCCCAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCG
AAACCGGCTGCTTCCACCCCAATGTTGATATCTACGGCAATATTTGCTTG
GACATTCTCCAGGATAAATGGTCATCAGCTTATGATGTGAGAACCATTCT
GCTATCGATCCAGTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAA
ACAGCCAGGCAGCACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATG
back to top