CK740073

Overview
NameCK740073
Unique NameCK740073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.458e-28
Identity = 64/136 (47.06%), Postives = 82/136 (60.29%), Query Frame = 2
Query:  293 SVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            S  +RL  +   +     +G+SA P  DN+  W   I G  DT FE   +RL + F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YDV  IL SIQSLL +PN SSP N +A+ L+  N++EY K
Sbjct:    4 SARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIK 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.458e-28
Identity = 64/136 (47.06%), Postives = 82/136 (60.29%), Query Frame = 2
Query:  293 SVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            S  +RL  +   +     +G+SA P  DN+  W   I G  DT FE   +RL + F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YDV  IL SIQSLL +PN SSP N +A+ L+  N++EY K
Sbjct:    4 SARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIK 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.604e-28
Identity = 61/133 (45.86%), Postives = 80/133 (60.15%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            +RL  +   +     +G+SA P  DN+  W   I G  DT FE   +RL + F   YP KPP+VKF +  FHPNV   G +CLDILQ++WS  YDV  +L SIQSLL +PN  SP N +A+ L+  N+ EY K
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIK 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.604e-28
Identity = 62/133 (46.62%), Postives = 86/133 (64.66%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            +RL  +   L     +GIS  P E+NI  W+  I G  D+++EG  ++LSL F  +YP   P VKF +  FHPNV   G+ICLDILQ++WS  YD+  IL SIQSLL +PN +SP NS++A+L+  N+ EY +
Sbjct:    7 RRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNR 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 60/131 (45.80%), Postives = 80/131 (61.07%), Query Frame = 2
Query:  293 SVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 685
            S+ +R+  E   LM     GI+A P+E+N   +   + G  D+ FEG  ++L L  P DYP   PKV+F T  +HPN+D  G ICLD+L+DKWS A  +RTILLSIQ+LL  PN   PL +  A+LW   E
Sbjct:    3 SLPRRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNE 133          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            LKR+Q EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPK+ F T  +HPN++  G+ICLDIL+ +WS A  V  +LLSI SLL +PN   PL    AQ++ S++E+Y +
Sbjct:    3 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            LKR+Q EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPK+ F T  +HPN++  G+ICLDIL+ +WS A  V  +LLSI SLL +PN   PL    AQ++ S++E+Y +
Sbjct:    3 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            LKR+Q EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPK+ F T  +HPN++  G+ICLDIL+ +WS A  V  +LLSI SLL +PN   PL    AQ++ S++E+Y +
Sbjct:    3 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNR 136          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.212e-27
Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            +RL  +   +      G+SA P  DN+  W   I G  +T FE   +R+ L F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YDV  IL S+QSLL +PN SSP N +A+ L+  ++++Y K
Sbjct:    7 RRLMRDFKRMQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEK 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.212e-27
Identity = 62/133 (46.62%), Postives = 81/133 (60.90%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            +RL  +   L      GIS  P  DNI  W   I G  +T FE   +RL+L+F + YP KPP V+F +  FHPN+   G +CLDILQ++WS  YDV  IL S+QSLL +PN +SP N  AAQL+  N +EY +
Sbjct:    7 RRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYER 139          
The following BLAST results are available for this feature:
BLAST of CK740073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC2_EMENI4.458e-2847.06Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_ASPFU4.458e-2847.06Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_TRIHA7.604e-2845.86Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_DICDI7.604e-2846.62Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBE2N_DROME1.297e-2745.80Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UB2D1_MOUSE1.297e-2745.52Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN1.297e-2745.52Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN1.297e-2745.52Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC2_YARLI2.212e-2744.36Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC2_CRYNE2.212e-2746.62Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740073 ID=CK740073; Name=CK740073; organism=Citrus sinensis; type=EST; length=700bp
AACACTCTCTGAAGAAGAAGAGAAGATCAATAAAACCCTAATTCGTTCTC
TTCTTCTTCTTCTTCTTCTCATTGTCACTGCAATTGAGCAATCCGACAGC
GTTTTCTTGCCCTTTCTTGATCTGGGTTATTGAGTTTTCTTTGTTTGAAT
CAAGAAACAAAGAAGAAAGAAAAATAATACAAAAGTTATGGCTACAGTTA
ACGGGTACCAAGGCAATACTCCGGTGGCCGCTTCGACAACGGCAACAGCA
CCGAAACAGCCCGTCAACACTTTAAAGACTGTGGATACGCAATCTGTGCT
TAAAAGGCTGCAATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTG
GGATATCTGCATTCCCGGAGGAGGATAACATATTCTGCTGGAAAGGGACG
ATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTC
CCTTTCATTTCCCAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCG
AAACCGGCTGCTTCCACCCCAATGTTGATATCTACGGCAATATTTGCTTG
GACATTCTCCAGGATAAATGGTCATCAGCTTATGATGTGAGAACCATTCT
GCTATCGATCCAGTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAA
ACAGCCAGGCAGCACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATG
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