CK740073

Overview
NameCK740073
Unique NameCK740073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 64/131 (48.85%), Postives = 79/131 (60.31%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEY 691
            KRL  +   L      GIS  P  DN+  W   I G  DT FE   ++L L+F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YDV  IL SIQSLL +PN +SP N++AA L+  N +EY
Sbjct:    7 KRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEY 137          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27
Identity = 60/133 (45.11%), Postives = 79/133 (59.40%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            +RL  +   +     +G+SA P  DN+  W   I G  DT FE   +RL + F   YP KPP VKF +  FHPNV   G +CLDILQ++WS  YDV  +L SIQSLL +PN  S  N +A+ L+  N++EY K
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHK 139          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 61/129 (47.29%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEE 688
            KR+  E   LM     GISA P  DN   +K  I G  D+ FEG  + L L   +DYP   PKV+F T  +HPN+D  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E+
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEK 134          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 60/135 (44.44%), Postives = 87/135 (64.44%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 700
            LKR+Q EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  V  +LLSI SLL +PN   PL  + A  + +++E+Y ++
Sbjct:    3 LKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRL 137          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 59/128 (46.09%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 685
            +RL  +   +      G+SA P  DN+  W   I G  DT +E   +RL L F  DYP KPP VKF +  FHPNV   G ICLDILQ++W+  YDV +IL SIQSL  +PN +SP N +AA L+ + +
Sbjct:    7 RRLMRDFKRMKEDSPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHK 134          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 59/125 (47.20%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 673
            LKR+  EL  L     S  SA P  D++F W+ TI G  D+ + G  + LS+ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+D+WS A  +  +LLSI SLL +PN   PL  + A ++
Sbjct:    3 LKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVY 127          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 57/134 (42.54%), Postives = 88/134 (65.67%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            LKR+  EL  L     +  SA P  +++F W+ TI G  D+ ++G  + L++ FP +YPFKPPKV+F T  +HPNV+  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + AQ++ +++++Y +
Sbjct:    3 LKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNR 136          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 57/134 (42.54%), Postives = 88/134 (65.67%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRK 697
            LKR+  EL  L     +  SA P  +++F W+ TI G  D+ ++G  + L++ FP +YPFKPPKV+F T  +HPNV+  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + AQ++ +++++Y +
Sbjct:    3 LKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNR 136          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 58/128 (45.31%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 685
            +R+  E   L+     GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W + E
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNE 133          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 58/135 (42.96%), Postives = 88/135 (65.19%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 700
            LKR+  EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++E+Y ++
Sbjct:    3 LKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNEL 137          
The following BLAST results are available for this feature:
BLAST of CK740073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC2_USTMA2.890e-2748.85Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_NEUCR3.774e-2745.11Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBE2N_DICDI6.437e-2747.29Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UB2D4_HUMAN6.437e-2744.44Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBC2_CANGA1.098e-2646.09Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC4_SCHPO1.873e-2647.20Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
U2D2B_RAT2.446e-2642.54Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE2.446e-2642.54Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBE2N_RAT3.195e-2645.31Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBCD1_DROME3.195e-2642.96Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740073 ID=CK740073; Name=CK740073; organism=Citrus sinensis; type=EST; length=700bp
AACACTCTCTGAAGAAGAAGAGAAGATCAATAAAACCCTAATTCGTTCTC
TTCTTCTTCTTCTTCTTCTCATTGTCACTGCAATTGAGCAATCCGACAGC
GTTTTCTTGCCCTTTCTTGATCTGGGTTATTGAGTTTTCTTTGTTTGAAT
CAAGAAACAAAGAAGAAAGAAAAATAATACAAAAGTTATGGCTACAGTTA
ACGGGTACCAAGGCAATACTCCGGTGGCCGCTTCGACAACGGCAACAGCA
CCGAAACAGCCCGTCAACACTTTAAAGACTGTGGATACGCAATCTGTGCT
TAAAAGGCTGCAATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTG
GGATATCTGCATTCCCGGAGGAGGATAACATATTCTGCTGGAAAGGGACG
ATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTC
CCTTTCATTTCCCAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCG
AAACCGGCTGCTTCCACCCCAATGTTGATATCTACGGCAATATTTGCTTG
GACATTCTCCAGGATAAATGGTCATCAGCTTATGATGTGAGAACCATTCT
GCTATCGATCCAGTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAA
ACAGCCAGGCAGCACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATG
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