CK740073

Overview
NameCK740073
Unique NameCK740073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 58/128 (45.31%), Postives = 76/128 (59.38%), Query Frame = 2 
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 685
            +R+  E   L+     GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133
[Close]
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 58/128 (45.31%), Postives = 76/128 (59.38%), Query Frame = 2 
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 685
            +R+  E   L+     GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133
[Close]
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 58/128 (45.31%), Postives = 76/128 (59.38%), Query Frame = 2 
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 685
            +R+  E   L+     GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133
[Close]
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 58/128 (45.31%), Postives = 76/128 (59.38%), Query Frame = 2 
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 685
            +R+  E   L+     GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133
[Close]
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 58/128 (45.31%), Postives = 76/128 (59.38%), Query Frame = 2 
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 685
            +R+  E   L+     GI A P+E N   +   I G +D+ FEG  ++L L  P +YP   PKV+F T  +HPNVD  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL +  A+ W   E
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133
[Close]
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 57/135 (42.22%), Postives = 88/135 (65.19%), Query Frame = 2 
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 700
            LKR+  EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++++Y ++
Sbjct:    3 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRI 137
[Close]
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 57/135 (42.22%), Postives = 88/135 (65.19%), Query Frame = 2 
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 700
            LKR+  EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++++Y ++
Sbjct:    3 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRI 137
[Close]
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 57/135 (42.22%), Postives = 88/135 (65.19%), Query Frame = 2 
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 700
            LKR+  EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++++Y ++
Sbjct:    3 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRI 137
[Close]
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 57/135 (42.22%), Postives = 88/135 (65.19%), Query Frame = 2 
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 700
            LKR+  EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++++Y ++
Sbjct:    3 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRI 137
[Close]
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 57/135 (42.22%), Postives = 88/135 (65.19%), Query Frame = 2 
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 700
            LKR+  EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++++Y ++
Sbjct:    3 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRI 137
The following BLAST results are available for this feature:
BLAST of CK740073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBE2N_PONAB4.173e-2645.31Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE4.173e-2645.31Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN4.173e-2645.31Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN4.173e-2645.31Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2N_MACFA5.449e-2645.31Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UB2D3_RAT5.449e-2642.22Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB5.449e-2642.22Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE5.449e-2642.22Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA5.449e-2642.22Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN5.449e-2642.22Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740073 ID=CK740073; Name=CK740073; organism=Citrus sinensis; type=EST; length=700bp
AACACTCTCTGAAGAAGAAGAGAAGATCAATAAAACCCTAATTCGTTCTC
TTCTTCTTCTTCTTCTTCTCATTGTCACTGCAATTGAGCAATCCGACAGC
GTTTTCTTGCCCTTTCTTGATCTGGGTTATTGAGTTTTCTTTGTTTGAAT
CAAGAAACAAAGAAGAAAGAAAAATAATACAAAAGTTATGGCTACAGTTA
ACGGGTACCAAGGCAATACTCCGGTGGCCGCTTCGACAACGGCAACAGCA
CCGAAACAGCCCGTCAACACTTTAAAGACTGTGGATACGCAATCTGTGCT
TAAAAGGCTGCAATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTG
GGATATCTGCATTCCCGGAGGAGGATAACATATTCTGCTGGAAAGGGACG
ATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTC
CCTTTCATTTCCCAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCG
AAACCGGCTGCTTCCACCCCAATGTTGATATCTACGGCAATATTTGCTTG
GACATTCTCCAGGATAAATGGTCATCAGCTTATGATGTGAGAACCATTCT
GCTATCGATCCAGTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAA
ACAGCCAGGCAGCACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATG
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