CK740073

Overview
NameCK740073
Unique NameCK740073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 57/135 (42.22%), Postives = 88/135 (65.19%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 700
            LKR+  EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++++Y ++
Sbjct:    3 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRI 137          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 685
            +R+  E   L+     GISA P EDN+  +   I G   + +EG  ++L L  P +YP   PKV+F T  +HPN+D  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL+   A+ W + E
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNE 135          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 56/125 (44.80%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 673
            LKR+  EL  L     S  SA P  +++F W+ TI G  D+ + G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+D+WS A  +  +LLSI S+L +PN   PL  + A ++
Sbjct:    3 LKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVY 127          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 56/128 (43.75%), Postives = 77/128 (60.16%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 685
            +R+  E   L+     GISA P E+N+  +   I G   + +EG  ++L L  P +YP   PKV+F T  +HPN+D  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL+   A+ W + E
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNE 135          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 685
            KR+  EL  L     +  SA P  D+++ W+ +I G  D+ + G  + LS+ FP DYPFKPPKV F T  +HPN++  GNICLDIL+D+WS A  +  +LLSI SLL + N   PL  + AQ++   +
Sbjct:    5 KRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDK 132          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 56/135 (41.48%), Postives = 87/135 (64.44%), Query Frame = 2
Query:  299 LKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 700
            LKR+  EL  L     +  SA P  D++F W+ TI G  D+ ++G  + L++ FP DYPFKPPKV F T  +HPN++   +ICLDIL+ +WS A  +  +LLSI SLL +PN   PL  + A+++ +++++Y ++
Sbjct:    3 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRI 137          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 56/124 (45.16%), Postives = 77/124 (62.10%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 673
            KR+  EL  L        SA P  D++F W+ TI G  D+ F G  + +++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+++WS A  V  +LLSI SLL +PN   PL  + A ++
Sbjct:    4 KRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIY 127          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 673
            KR+  EL  L     S  SA P  +++F W+ TI G  D+ + G  + L++ FP DYPFKPPKV F T  +HPN++  G+ICLDIL+D+WS A  +  +LLSI S+L +PN   PL  + A ++
Sbjct:    4 KRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVY 127          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQE 685
            KR+  EL  L     +  SA P  +++F W+ TI G  D+ + G  + +++ FP DYPFKPPKV F T  FHPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++   +
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDK 131          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 673
            KR+  EL  L     +  SA P  +++F W+ TI G  D+ + G  + +S+ FP DYPFKPPKV F T  FHPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY 127          
The following BLAST results are available for this feature:
BLAST of CK740073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UB2D2_PIG7.117e-2642.22Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UBC35_ARATH9.295e-2644.53Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC1_MAGGR1.214e-2544.80Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC36_ARATH2.705e-2543.75Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC5_YEAST3.532e-2543.75Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UB2D3_BOVIN3.532e-2541.48Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC30_ARATH4.613e-2545.16Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC1_COLGL4.613e-2544.35Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC9_ARATH6.025e-2542.19SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC4_SOLLC6.025e-2544.35Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740073 ID=CK740073; Name=CK740073; organism=Citrus sinensis; type=EST; length=700bp
AACACTCTCTGAAGAAGAAGAGAAGATCAATAAAACCCTAATTCGTTCTC
TTCTTCTTCTTCTTCTTCTCATTGTCACTGCAATTGAGCAATCCGACAGC
GTTTTCTTGCCCTTTCTTGATCTGGGTTATTGAGTTTTCTTTGTTTGAAT
CAAGAAACAAAGAAGAAAGAAAAATAATACAAAAGTTATGGCTACAGTTA
ACGGGTACCAAGGCAATACTCCGGTGGCCGCTTCGACAACGGCAACAGCA
CCGAAACAGCCCGTCAACACTTTAAAGACTGTGGATACGCAATCTGTGCT
TAAAAGGCTGCAATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTG
GGATATCTGCATTCCCGGAGGAGGATAACATATTCTGCTGGAAAGGGACG
ATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTC
CCTTTCATTTCCCAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCG
AAACCGGCTGCTTCCACCCCAATGTTGATATCTACGGCAATATTTGCTTG
GACATTCTCCAGGATAAATGGTCATCAGCTTATGATGTGAGAACCATTCT
GCTATCGATCCAGTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAA
ACAGCCAGGCAGCACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATG
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