CK740073

Overview
NameCK740073
Unique NameCK740073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 56/134 (41.79%), Postives = 83/134 (61.94%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW-SNQEEYRKM 700
            +R+  EL  L        SA P  +++F W+ TI G  ++ + G  + +++ FP DYPFKPPKV F T  FHPN++  GNICLDIL+D+WS A  +  +LLSI SLL +PN   PL  + A ++ +++ +Y  M
Sbjct:    4 RRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAM 137          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 673
            KR+  EL  L     +  SA P  +++F W+ TI G  D+ + G  + +++ FP DYPFKPPKV F T  FHPNV+  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY 127          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 56/135 (41.48%), Postives = 83/135 (61.48%), Query Frame = 2
Query:  293 SVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLWSNQEEYRK 697
            S+ KR+  E   L+     GI+A P +DN+  ++ TI+G + + +E   + L L  P+DYP + PKV+F T  +HPN+D  G ICLD+L+  WS A  +RT+LLSIQ+LL  PN + PL +  A+ W   E+  K
Sbjct:    3 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAK 137          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKM 700
            KR+Q EL  + +      SA P+ DNI+ W+ TI G   +V+EG  + L ++F  DYPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ +M
Sbjct:   58 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRM 191          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKM 700
            KR+Q EL  + +      SA P+ DNI+ W+ TI G   +V+EG  + L ++F  DYPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ +M
Sbjct:   58 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRM 191          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 60/142 (42.25%), Postives = 86/142 (60.56%), Query Frame = 2
Query:  278 TVDTQSVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKM 700
            T    +  KR+Q EL  + +      SA P+ DNI+ W+ TI G   +V+EG  + L ++F +DYPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ ++
Sbjct:   56 TAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRI 197          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 60/142 (42.25%), Postives = 86/142 (60.56%), Query Frame = 2
Query:  278 TVDTQSVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKM 700
            T    +  KR+Q EL  + +      SA P+ DNI+ W+ TI G   +V+EG  + L ++F +DYPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ ++
Sbjct:   56 TAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRI 197          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 60/142 (42.25%), Postives = 86/142 (60.56%), Query Frame = 2
Query:  278 TVDTQSVLKRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPL-NSQAAQLWSNQEEYRKM 700
            T    +  KR+Q EL  + +      SA P+ DNI+ W+ TI G   +V+EG  + L ++F +DYPFKPPKV F T  +H N++  G ICLDIL+D WS A  +  +LLSI SLL + N + PL  S A Q  +N+ E+ ++
Sbjct:   56 TAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRI 197          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 54/124 (43.55%), Postives = 79/124 (63.71%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 673
            KR+  EL  L     S  SA P  +++F W+ TI G  ++ + G  + +S+ FP DYPFKPPKV F+T  +HPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++
Sbjct:    4 KRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMY 127          
BLAST of CK740073 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = 2
Query:  302 KRLQSELMALMMSGDSGISAFPEEDNIFCWKGTIQGSKDTVFEGTEYRLSLSFPNDYPFKPPKVKFETGCFHPNVDIYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNSQAAQLW 673
            KR+  EL  L     +  SA P  D+++ W+ +I G  D+ + G  + LS+ FP DYPFKPPK+ F T  +HPN++  GNICLDIL+D+WS A  +  +LLSI SLL + N   PL  + A ++
Sbjct:    5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIY 128          
The following BLAST results are available for this feature:
BLAST of CK740073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC29_ARATH6.025e-2541.79Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC28_ARATH6.025e-2544.35Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC13_YEAST6.025e-2541.48Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UB2E2_MOUSE6.025e-2544.78Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN6.025e-2544.78Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UB2E3_MOUSE7.869e-2542.25Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN7.869e-2542.25Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN7.869e-2542.25Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UBC11_ARATH1.028e-2443.55Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC4_YEAST1.753e-2443.55Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740073 ID=CK740073; Name=CK740073; organism=Citrus sinensis; type=EST; length=700bp
AACACTCTCTGAAGAAGAAGAGAAGATCAATAAAACCCTAATTCGTTCTC
TTCTTCTTCTTCTTCTTCTCATTGTCACTGCAATTGAGCAATCCGACAGC
GTTTTCTTGCCCTTTCTTGATCTGGGTTATTGAGTTTTCTTTGTTTGAAT
CAAGAAACAAAGAAGAAAGAAAAATAATACAAAAGTTATGGCTACAGTTA
ACGGGTACCAAGGCAATACTCCGGTGGCCGCTTCGACAACGGCAACAGCA
CCGAAACAGCCCGTCAACACTTTAAAGACTGTGGATACGCAATCTGTGCT
TAAAAGGCTGCAATCTGAATTGATGGCCTTAATGATGAGTGGGGATTCTG
GGATATCTGCATTCCCGGAGGAGGATAACATATTCTGCTGGAAAGGGACG
ATCCAGGGCAGCAAAGACACTGTTTTCGAAGGAACTGAATACAGGCTTTC
CCTTTCATTTCCCAATGATTACCCCTTCAAGCCTCCTAAAGTGAAGTTCG
AAACCGGCTGCTTCCACCCCAATGTTGATATCTACGGCAATATTTGCTTG
GACATTCTCCAGGATAAATGGTCATCAGCTTATGATGTGAGAACCATTCT
GCTATCGATCCAGTCTCTGCTTGGAGAACCAAACATTAGCTCTCCTCTAA
ACAGCCAGGCAGCACAACTTTGGAGCAATCAAGAAGAATATAGGAAGATG
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