CK740116

Overview
NameCK740116
Unique NameCK740116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740116 vs. ExPASy Swiss-Prot
Match: PARP3_ORYSJ (Poly [ADP-ribose] polymerase 3 OS=Oryza sativa subsp. japonica GN=PARP3 PE=2 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 1.470e-12
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 3
Query:   24 LEALQDIEIASRLVG--FDVDSDDSLDEKYKKLRCDIAPLPHDSEDYQLI 167
            LE ++DI +ASRL+G  F    DD L + YKKL C I  +  DSEDY++I
Sbjct:  571 LETVRDINVASRLIGDVFGSTLDDPLSQCYKKLGCSINRVVEDSEDYKMI 620          

HSP 2 Score: 44.669 bits (104), Expect = 1.470e-12
Identity = 29/96 (30.21%), Postives = 46/96 (47.92%), Query Frame = 2
Query:  170 KYLHTTHAPTHTD---WSLELEEVFSLEREGEFDKFSSYQ--RKLKNRMLLWHGSRVTNFVGILTQDXXXXXXXXXXTGYMFGKGIYFADLVSKSA 442
            KYL  T+ P       +S  +E ++++E         SY   +KL N++LLW G+R +N +  L              GYMFGK I  +D  +++A
Sbjct:  622 KYLEKTYEPVKVGDVVYSATVERIYAVESSA----LPSYDEIKKLPNKVLLWCGTRSSNLLRHLRDGFVPAVCHIPVPGYMFGKAIVCSDAAAEAA 713          
BLAST of CK740116 vs. ExPASy Swiss-Prot
Match: PARP3_SOYBN (Poly [ADP-ribose] polymerase 3 OS=Glycine max GN=PARP3 PE=2 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 5.426e-12
Identity = 30/96 (31.25%), Postives = 49/96 (51.04%), Query Frame = 2
Query:  170 KYLHTTHAPTHT---DWSLELEEVFSLEREGEFDKFSSYQR--KLKNRMLLWHGSRVTNFVGILTQDXXXXXXXXXXTGYMFGKGIYFADLVSKSA 442
            KYL  T+ P      ++ + +E +F+++  G      SY+   KL N++LLW GSR +N +  L +            GYMFGK I  +D  +++A
Sbjct:  605 KYLEKTYEPVKVGDIEYGVSVENIFAVQTGG----CPSYEDIIKLPNKVLLWCGSRSSNLLRHLQKGFLPAICSLPIPGYMFGKAIVCSDAAAEAA 696          

HSP 2 Score: 43.8986 bits (102), Expect = 5.426e-12
Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 3
Query:   24 LEALQDIEIASRLVGFDVDS--DDSLDEKYKKLRCDIAPLPHDSEDYQLI 167
            LE ++DI  AS L+G    S  DD L E YKKL C I+ L   S+DY++I
Sbjct:  554 LEGVRDITQASHLIGDMTGSTIDDPLSETYKKLGCSISALDKSSDDYEMI 603          
BLAST of CK740116 vs. ExPASy Swiss-Prot
Match: PARP3_MEDTR (Putative poly [ADP-ribose] polymerase 3 OS=Medicago truncatula GN=PARP3 PE=3 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 7.049e-12
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 3
Query:   24 LEALQDIEIASRLVGFDVDS--DDSLDEKYKKLRCDIAPLPHDSEDYQLI 167
            LE ++DI +AS L+G    S  DD L + YKKL C I PL  +S DY++I
Sbjct:  541 LEGVRDITLASHLIGDMSGSTIDDPLSDTYKKLGCSITPLEKNSNDYEMI 590          

HSP 2 Score: 44.2838 bits (103), Expect = 7.049e-12
Identity = 29/96 (30.21%), Postives = 47/96 (48.96%), Query Frame = 2
Query:  170 KYLHTTHAPTHT---DWSLELEEVFSLEREGEFDKFSSYQR--KLKNRMLLWHGSRVTNFVGILTQDXXXXXXXXXXTGYMFGKGIYFADLVSKSA 442
            KYL  T+ P      ++ + +E +F++E         SY    K+ N++LLW GSR +N +  L +            GYMFGK I  +D  +++A
Sbjct:  592 KYLEKTYEPVKVGDIEYGVSVENIFTVESSA----CPSYADIVKMPNKVLLWCGSRSSNLLRHLHKGFLPAICSLPVPGYMFGKAIVCSDAAAEAA 683          
BLAST of CK740116 vs. ExPASy Swiss-Prot
Match: PARP3_ARATH (Poly [ADP-ribose] polymerase 3 OS=Arabidopsis thaliana GN=PARP3 PE=2 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 1.541e-11
Identity = 28/96 (29.17%), Postives = 50/96 (52.08%), Query Frame = 2
Query:  170 KYLHTTHAP---THTDWSLELEEVFSLEREG--EFDKFSSYQRKLKNRMLLWHGSRVTNFVGILTQDXXXXXXXXXXTGYMFGKGIYFADLVSKSA 442
            KYL TT+ P   +  ++ + ++ VF++E +     D      +KL N++LLW GSR +N +  + +            GYMFG+ I  +D  +++A
Sbjct:  606 KYLETTYEPVKVSDVEYGVSVQNVFAVESDAIPSLDDI----KKLPNKVLLWCGSRSSNLLRHIYKGFLPAVCSLPVPGYMFGRAIVCSDAAAEAA 697          

HSP 2 Score: 42.743 bits (99), Expect = 1.541e-11
Identity = 22/50 (44.00%), Postives = 34/50 (68.00%), Query Frame = 3
Query:   27 EALQDIEIASRLVGFDVDSD---DSLDEKYKKLRCDIAPLPHDSEDYQLI 167
            E ++DI  ASRL+G D+  D   D L ++YKKL C I+ +  +SEDY+++
Sbjct:  556 ETVRDINTASRLIG-DMRGDTLDDPLSDRYKKLGCKISVVDKESEDYKMV 604          
The following BLAST results are available for this feature:
BLAST of CK740116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
PARP3_ORYSJ1.470e-1250.00Poly [ADP-ribose] polymerase 3 OS=Oryza sativa sub... [more]
PARP3_SOYBN5.426e-1231.25Poly [ADP-ribose] polymerase 3 OS=Glycine max GN=P... [more]
PARP3_MEDTR7.049e-1248.00Putative poly [ADP-ribose] polymerase 3 OS=Medicag... [more]
PARP3_ARATH1.541e-1129.17Poly [ADP-ribose] polymerase 3 OS=Arabidopsis thal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6610 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740116 ID=CK740116; Name=CK740116; organism=Citrus sinensis; type=EST; length=443bp
ATTTTAAGTCAAAGGTGAAAATGCTAGAAGCTCTGCAGGACATTGAAATA
GCTTCAAGATTAGTAGGTTTTGATGTTGATAGTGATGATTCCCTGGATGA
GAAATATAAGAAGCTTCGTTGTGATATTGCTCCACTTCCGCATGATAGTG
AGGATTACCAACTGATTGAAAGTACCTCCATACTACGCATGCCCCTACTC
ATACTGATTGGTCACTGGAACTGGAAGAAGTTTTTTCACTTGAAAGGGAA
GGGGAATTTGATAAGTTTTCTTCTTATCAAAGAAAGCTTAAAAATAGAAT
GCTCCTCTGGCATGGGTCTCGGGTGACAAATTTTGTGGGAATCCTCACCC
AGGACTGAGAATAGCCCCCTCCTGAAGCACCGGCAACTGGCTATATGTTT
GGTAAGGGAATTTACTTTGCTGACCTAGTCAGTAAAAGTGCTC
back to top