CK932947

Overview
NameCK932947
Unique NameCK932947
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932947 vs. ExPASy Swiss-Prot
Match: FPPS_KLULA (Farnesyl pyrophosphate synthetase OS=Kluyveromyces lactis GN=FPS1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.819e-28
Identity = 64/103 (62.14%), Postives = 75/103 (72.82%), Query Frame = 2
Query:  434 GKLNRGLSVVDSYRLLKEGK---ELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVD 733
            GKLNRGLSVVD+Y LLK  K   EL+ +E+   + LGWCIE LQAYFLV DD+MD S TRRGQPCW++V  VG IA ND  +L   I  +LK HFR +PYYVD
Sbjct:   47 GKLNRGLSVVDTYALLKGYKSVSELSAEEYKKVAILGWCIELLQAYFLVADDMMDQSITRRGQPCWYKVENVGDIAINDAFMLEGAIYCLLKKHFRTEPYYVD 149          
BLAST of CK932947 vs. ExPASy Swiss-Prot
Match: FPPS_YEAST (Farnesyl pyrophosphate synthetase OS=Saccharomyces cerevisiae GN=FPP1 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.682e-28
Identity = 60/102 (58.82%), Postives = 78/102 (76.47%), Query Frame = 2
Query:  434 GKLNRGLSVVDSYRLL--KEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVD 733
            GKLNRGLSVVD+Y +L  K  ++L  +E+   + LGWCIE LQAYFLV DD+MD S TRRGQPCW++VP+VG IA ND  +L   I ++LK+HFR++ YY+D
Sbjct:   51 GKLNRGLSVVDTYAILSNKTVEQLGQEEYEKVAILGWCIELLQAYFLVADDMMDKSITRRGQPCWYKVPEVGEIAINDAFMLEAAIYKLLKSHFRNEKYYID 152          
BLAST of CK932947 vs. ExPASy Swiss-Prot
Match: FPPS_NEUCR (Farnesyl pyrophosphate synthetase OS=Neurospora crassa GN=fpp PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.710e-25
Identity = 58/108 (53.70%), Postives = 75/108 (69.44%), Query Frame = 2
Query:  410 SLPIVFLAGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVD 733
            SL +  L GK NRG+SV DS  +L  G+ LT++E+F ++ LGW  E LQA+FLV DDIMD S TRRG+PCW+R   VGM+A ND  +L + I  +LK +FR  P YVD
Sbjct:   41 SLEVNTLGGKCNRGMSVPDSASILL-GRPLTEEEYFQAATLGWMTELLQAFFLVSDDIMDSSITRRGKPCWYRQEGVGMVAINDAFMLESAIYTLLKKYFRSHPRYVD 147          
BLAST of CK932947 vs. ExPASy Swiss-Prot
Match: FPPS_GIBFU (Farnesyl pyrophosphate synthetase OS=Gibberella fujikuroi GN=FPPS PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.710e-25
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 2
Query:  410 SLPIVFLAGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVD 733
            SL +  L GK NRG+SV DS  LL E K LT++++F ++ LGW  E LQA+FLV DDIMD S TRRGQPCW+R   VGMIA ND  +L + I  +LK +FR  P Y D
Sbjct:   41 SLEVNPLGGKCNRGMSVPDSVSLLLE-KPLTEEQYFQAATLGWMTELLQAFFLVSDDIMDSSITRRGQPCWYRQEGVGMIAINDAFMLESAIYTLLKKYFRSHPAYFD 147          
BLAST of CK932947 vs. ExPASy Swiss-Prot
Match: FPPS_SCHPO (Farnesyl pyrophosphate synthetase OS=Schizosaccharomyces pombe GN=fps1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.502e-24
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 2
Query:  428 LAGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVD 733
            L GK NRGLSV+DSY +L  G  L +  +  ++ LGW +E LQ++FL+ DDIMD S TRRGQPCW+ +P VG IA ND  ++ + I  +LK HFR +  YVD
Sbjct:   47 LGGKYNRGLSVIDSYEILL-GHPLDEAAYMKAAVLGWMVELLQSFFLIADDIMDASKTRRGQPCWYLMPGVGNIAINDAFMVESAIYFLLKKHFRQESCYVD 147          
BLAST of CK932947 vs. ExPASy Swiss-Prot
Match: FPPS_BOVIN (Farnesyl pyrophosphate synthetase OS=Bos taurus GN=FDPS PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.946e-23
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 2
Query:  428 LAGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVD 733
            + GK NRGL+VV ++R L E  +   D    +  +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P +G+ A ND  LL + I R+LK + R++PYY+D
Sbjct:   54 IGGKYNRGLTVVITFRELVEPGKQDPDSLQRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQTCWYQKPGIGLDAINDAFLLESSIYRLLKLYCREQPYYLD 155          
BLAST of CK932947 vs. ExPASy Swiss-Prot
Match: FPPS_RAT (Farnesyl pyrophosphate synthetase OS=Rattus norvegicus GN=Fdps PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.038e-22
Identity = 49/102 (48.04%), Postives = 73/102 (71.57%), Query Frame = 2
Query:  428 LAGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVD 733
            + GK NRGL+VV +++ L E ++   +    +  +GWC+E LQA+FLVLDDIMD S+TRRGQ CW++ P +G+ A ND +LL   I R+LK + R++PYY++
Sbjct:   54 VGGKYNRGLTVVQTFQELVEPRKQDAESLQRALTVGWCVELLQAFFLVLDDIMDSSYTRRGQICWYQKPGIGLDAINDALLLEAAIYRLLKFYCREQPYYLN 155          
BLAST of CK932947 vs. ExPASy Swiss-Prot
Match: FPPS_MOUSE (Farnesyl pyrophosphate synthetase OS=Mus musculus GN=Fdps PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.019e-22
Identity = 50/102 (49.02%), Postives = 71/102 (69.61%), Query Frame = 2
Query:  428 LAGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVD 733
            L GK NRGL+VV +++ L E K+   +    +  +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P +G+ A ND +LL   I R+LK + R++PYY++
Sbjct:   54 LGGKYNRGLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRLLKFYCREQPYYLN 155          
BLAST of CK932947 vs. ExPASy Swiss-Prot
Match: FPPS_HUMAN (Farnesyl pyrophosphate synthetase OS=Homo sapiens GN=FDPS PE=1 SV=4)

HSP 1 Score: 103.605 bits (257), Expect = 1.147e-21
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 2
Query:  428 LAGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVD 733
            + GK NRGL+VV ++R L E ++   D    +  +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P VG+ A ND  LL   I R+LK + R++PYY++
Sbjct:  120 IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLN 221          
BLAST of CK932947 vs. ExPASy Swiss-Prot
Match: FPPS_CHICK (Farnesyl pyrophosphate synthetase OS=Gallus gallus GN=FDPS PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 50/99 (50.51%), Postives = 65/99 (65.66%), Query Frame = 2
Query:  434 GKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYV 730
            GK NRGL+VV +YR L    +   +    + A+GWCIE  QA+FLV DDIMD S TRRGQ CW++   VG+ A ND  LL + + R+LK + R +PYYV
Sbjct:   70 GKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAFFLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYV 168          
The following BLAST results are available for this feature:
BLAST of CK932947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FPPS_KLULA2.819e-2862.14Farnesyl pyrophosphate synthetase OS=Kluyveromyces... [more]
FPPS_YEAST3.682e-2858.82Farnesyl pyrophosphate synthetase OS=Saccharomyces... [more]
FPPS_NEUCR1.710e-2553.70Farnesyl pyrophosphate synthetase OS=Neurospora cr... [more]
FPPS_GIBFU1.710e-2555.56Farnesyl pyrophosphate synthetase OS=Gibberella fu... [more]
FPPS_SCHPO5.502e-2451.96Farnesyl pyrophosphate synthetase OS=Schizosacchar... [more]
FPPS_BOVIN7.946e-2350.00Farnesyl pyrophosphate synthetase OS=Bos taurus GN... [more]
FPPS_RAT1.038e-2248.04Farnesyl pyrophosphate synthetase OS=Rattus norveg... [more]
FPPS_MOUSE3.019e-2249.02Farnesyl pyrophosphate synthetase OS=Mus musculus ... [more]
FPPS_HUMAN1.147e-2150.00Farnesyl pyrophosphate synthetase OS=Homo sapiens ... [more]
FPPS_CHICK3.338e-2150.51Farnesyl pyrophosphate synthetase OS=Gallus gallus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_F05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932947 ID=CK932947; Name=CK932947; organism=Citrus sinensis; type=EST; length=735bp
GGGGCTCTCACAAACCAACTCTCTCTCTNNNNNTCTCTTCTCTGTATTTT
GCTTTCTTTCATTCTGTTTCTCTCTTTTTTTTCTTACTTTTTTTTTGGTG
GTGGGTCGCAAAAGCGGAAGGTAAAAAATGAGTGATCTGAAGTCAAGATT
CATTGAGGTGTATGGCGTTTTGAAACAAGAGCTGCTGAATGATCCTGCAT
TTGAGTTCGATCACGATTCTCGCCAATGGGTTGATCGTATGCTGGATTAC
AATGTACCTGGAGGTTAGATAAAAATGTTATATATCTTGTACATTTAAGG
AAGCTTCTGTTTTGTTTGCTTGTGCTGGGCATGTTGGACATCCTCTTCCA
AGAAAGAGGAACTTCCTTTGTTTGAATAGAAAATATGAAAACTTCACTTA
ATTTAACCATCATTACCGATTGTATTCTTGGCAGGAAAGCTGAACCGAGG
GCTATCTGTTGTTGACAGCTACAGGTTACTGAAAGAAGGAAAAGAACTAA
CAGATGATGAATTCTTTCTCTCATCTGCACTAGGCTGGTGCATCGAATGG
CTTCAAGCATATTTTCTTGTTCTTGATGATATCATGGATGGCTCTCATAC
ACGCCGTGGTCAACCTTGCTGGTTCAGAGTCCCCAAGGTTGGTATGATTG
CTGCAAATGATGGTGTCTTACTACGCAACCATATCTCCAGAATTCTCAAG
AATCATTTTAGAGACAAGCCTTATTACGTGGACCT
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