CK932947

Overview
NameCK932947
Unique NameCK932947
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932947 vs. ExPASy Swiss-Prot
Match: Y8823_DICDI (Probable farnesyl diphosphate synthase DDB_G0278823 OS=Dictyostelium discoideum GN=DDB_G0278823 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.820e-20
Identity = 50/133 (37.59%), Postives = 79/133 (59.40%), Query Frame = 2
Query:  353 KEELPLFE*KI*KLHLI*PSLPIVFLAGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPK------VGMIAANDGVLLRNHISRILKNHFRDKPYYVD 733
            K+EL   +     +H I   +      GK+NRG+SV++S   L EG+ LT  E F +  LGWC+E  QA +LV DDIMD S  RRG+PCW++  +      VG+ A ND  ++ + +  +L+ +F+++ YY++
Sbjct:   27 KKELEKIDFPKESIHWIETVIKANSTGGKMNRGISVLESLESLNEGRALTRHEIFQAQTLGWCVEIFQACYLVSDDIMDQSLKRRGKPCWYKQKRPNSDQEVGLAAINDSFIIESCVFILLEKYFKNESYYLN 159          
BLAST of CK932947 vs. ExPASy Swiss-Prot
Match: Y8742_DICDI (Probable farnesyl diphosphate synthase DDB_G0268742 OS=Dictyostelium discoideum GN=DDB_G0268742 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 2
Query:  530 LGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVP--------KVGMIAANDGVLLRNHISRILKNHFRDKPYYVD 733
            +GWC+E+L ++FL+ DDIMD   TRRG+ CW+R P        KVGM+A ND VL+ + +  ILK +F++K YYVD
Sbjct:  100 IGWCLEFL-SFFLITDDIMDNGLTRRGELCWYRHPSPFNPTEHKVGMLAINDSVLIESFLFFILKKYFKNKSYYVD 174          
BLAST of CK932947 vs. ExPASy Swiss-Prot
Match: GGPPS_SCHPO (Geranylgeranyl pyrophosphate synthetase OS=Schizosaccharomyces pombe GN=spo9 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  428 LAGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVD 733
            L GK NRGL+V+ S   L   +EL + EF  ++ LGW IE LQ  FL+ DDIMD S  RRG  CW+ V  V   A N+  LL   I  +++ +FR+ PYYVD
Sbjct:   52 LGGKNNRGLAVLQSLTSLIN-RELEEAEFRDAALLGWLIEILQGCFLMADDIMDQSIKRRGLDCWYLVVGVRR-AINESQLLEACIPLLIRKYFRNMPYYVD 151          
The following BLAST results are available for this feature:
BLAST of CK932947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
Y8823_DICDI4.820e-2037.59Probable farnesyl diphosphate synthase DDB_G027882... [more]
Y8742_DICDI1.040e-1450.00Probable farnesyl diphosphate synthase DDB_G026874... [more]
GGPPS_SCHPO1.040e-1447.06Geranylgeranyl pyrophosphate synthetase OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004349_F05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIIF_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932947 ID=CK932947; Name=CK932947; organism=Citrus sinensis; type=EST; length=735bp
GGGGCTCTCACAAACCAACTCTCTCTCTNNNNNTCTCTTCTCTGTATTTT
GCTTTCTTTCATTCTGTTTCTCTCTTTTTTTTCTTACTTTTTTTTTGGTG
GTGGGTCGCAAAAGCGGAAGGTAAAAAATGAGTGATCTGAAGTCAAGATT
CATTGAGGTGTATGGCGTTTTGAAACAAGAGCTGCTGAATGATCCTGCAT
TTGAGTTCGATCACGATTCTCGCCAATGGGTTGATCGTATGCTGGATTAC
AATGTACCTGGAGGTTAGATAAAAATGTTATATATCTTGTACATTTAAGG
AAGCTTCTGTTTTGTTTGCTTGTGCTGGGCATGTTGGACATCCTCTTCCA
AGAAAGAGGAACTTCCTTTGTTTGAATAGAAAATATGAAAACTTCACTTA
ATTTAACCATCATTACCGATTGTATTCTTGGCAGGAAAGCTGAACCGAGG
GCTATCTGTTGTTGACAGCTACAGGTTACTGAAAGAAGGAAAAGAACTAA
CAGATGATGAATTCTTTCTCTCATCTGCACTAGGCTGGTGCATCGAATGG
CTTCAAGCATATTTTCTTGTTCTTGATGATATCATGGATGGCTCTCATAC
ACGCCGTGGTCAACCTTGCTGGTTCAGAGTCCCCAAGGTTGGTATGATTG
CTGCAAATGATGGTGTCTTACTACGCAACCATATCTCCAGAATTCTCAAG
AATCATTTTAGAGACAAGCCTTATTACGTGGACCT
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