CK933311

Overview
NameCK933311
Unique NameCK933311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA4_YEAST (Proteasome component Y13 OS=Saccharomyces cerevisiae GN=PRE9 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.960e-25
Identity = 64/172 (37.21%), Postives = 98/172 (56.98%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMM-LPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGY-DRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIE 586
            YD   T FSP+GR++Q+EYA +++ ++GT IGI   DGIV+  E+ + S ++    S  +++ ++    +AVAGL AD   ++  A+  A NY   Y E IPV+ L +R++      T +  LRPFG   I  GY DR G QLY   PSG    +   ++G    AA+T ++
Sbjct:    6 YDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQ 177          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.559e-25
Identity = 61/172 (35.47%), Postives = 101/172 (58.72%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            YD ++T FSPDG +FQ+EYA +AV    T +GI+  + +V+GVEK   +K+    + R+I ++  H  MA AGL AD R ++ RA+ E  +++    +P+ V+ + + +A+     T     RPFG   ++ G+D DG P+LY  +PSG  + +   AIG+  +  +  +EK
Sbjct:    5 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEK 176          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA7_PONAB (Proteasome subunit alpha type-7 OS=Pongo abelii GN=PSMA7 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 3.343e-25
Identity = 60/172 (34.88%), Postives = 102/172 (59.30%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            YD ++T FSPDG +FQ+EYA +A+    T +G++ +D +V+GVEK   +K+    + R+I ++  +  MA AGL AD R ++ RA+ E  ++     + + V+ + + +AS     T     RPFG   ++ G+D DG P+LY  +PSG  + +   AIG+G ++ +  +EK
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAIKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDSVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEK 174          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.343e-25
Identity = 62/171 (36.26%), Postives = 93/171 (54.39%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            YD + TT+SP GR+FQ+EYA +AV+N    +G K KD +V+   K  +          ++  +  H GMA+AGL ADGR +    ++E  NY  ++    P+  +A+ V         +   RPFG G+++ GYD  GP LY   PSG  + +   A+G   QAA+T +EK
Sbjct:    6 YDTNTTTWSPTGRLFQVEYANEAVNNGSAAVGAKNKDFVVLTALKR-SPVAQFSSYQEKVFKLDDHVGMAIAGLVADGRMLARFVRTECMNYRYMHDSDNPLPLIAEIVGEKYQRHIQFAGKRPFGVGLLIAGYDSTGPHLYHTVPSGDVFDFKATAMGLRSQAARTYLEK 175          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.366e-25
Identity = 60/177 (33.90%), Postives = 100/177 (56.50%), Query Frame = 2
Query:   65 IGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD--GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            +G  Y  S+TTFSP G++ QIEYA  AV N    +G++ KDG+V+  E + +   +L     ++  + +H G   +G+  D R +V +A+  A  YE +YGE +P  +L   +A+ +   T    +RPFG  +++ G+D++   P L+  +PSG  + +   A+GK    AKT +EK
Sbjct:    1 MGDHYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATENVGS---VLTDDQPKVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEK 174          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.702e-25
Identity = 60/171 (35.09%), Postives = 95/171 (55.56%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            YD   TT+SP GR+ Q+EYA +A+      +G+  K   V+   K  A +  L    +++  +  H G+A+AGLA D R +    K EA + ++++  PIPV+ L  +VA    + T  +  RP+G G ++ GYD  GP L   +PSG+   Y G ++G   Q+A+T IE+
Sbjct:    6 YDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEE--LSSYQKKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIER 174          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 9.726e-25
Identity = 59/176 (33.52%), Postives = 101/176 (57.39%), Query Frame = 2
Query:   68 GTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG-TVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFG-CGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 589
            G GYD  +T FSP+GR+FQ+EYA KAV  +G T IG++ KD + +  +K +  K++   S   +  + ++ G+   G+ AD R +V +A+++A  +   YG  +PV  LA+ +A    + T + ++RP G   +++G  + +GP LY  +P+G  Y +   + G   Q A   +EK
Sbjct:    6 GAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEK 181          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSA2_YEAST (Proteasome component Y7 OS=Saccharomyces cerevisiae GN=PRE8 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.270e-24
Identity = 70/215 (32.56%), Postives = 116/215 (53.95%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEA-TNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDES 715
            Y  S+TTFSP G++ QI+YA  AV    T +GIK  +G+V+  EK  +S + +  +  ++  +    G   +G+  D R +V +++  A T+Y+ +YGE  P K L   VA  +   T    +RPFG  +++ G+D  +G  LY ++PSG  + +   AIGKG  AAKT +EK    E+   +  I +A +      E +     +E++ + DE+
Sbjct:    5 YSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELEL-EDAIHIALLTLKESVEGEFNGDTIELAIIGDEN 218          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.659e-24
Identity = 58/162 (35.80%), Postives = 90/162 (55.56%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGR 562
            YD  +T FSPDGR++Q+EYA +AV      IG++  +G+V+ V+K   S ++   S  ++H +  H G A AG  AD RQ+V  A+ ++      Y EPI V+ L + V  ++   T     RPFG  +++ G +   P+L+  +PSG S  +   AIG  R
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEGGEPRLFETDPSGTSNEWKAVAIGSNR 171          
BLAST of CK933311 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.659e-24
Identity = 58/162 (35.80%), Postives = 90/162 (55.56%), Query Frame = 2
Query:   77 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGR 562
            YD  +T FSPDGR++Q+EYA +AV      IG++  +G+V+ V+K   S ++   S  ++H +  H G A AG  AD RQ+V  A+ ++      Y EPI V+ L + V  ++   T     RPFG  +++ G +   P+L+  +PSG S  +   AIG  R
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEGGEPRLFETDPSGTSNEWKAVAIGSNR 171          
The following BLAST results are available for this feature:
BLAST of CK933311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA4_YEAST1.960e-2537.21Proteasome component Y13 OS=Saccharomyces cerevisi... [more]
PSA7L_MACFA2.559e-2535.47Proteasome subunit alpha type-7-like OS=Macaca fas... [more]
PSA7_PONAB3.343e-2534.88Proteasome subunit alpha type-7 OS=Pongo abelii GN... [more]
PSA1_TRYCR3.343e-2536.26Proteasome subunit alpha type-1 OS=Trypanosoma cru... [more]
PSA2_CAEEL4.366e-2533.90Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]
PSA1_SCHPO5.702e-2535.09Probable proteasome subunit alpha type-1 OS=Schizo... [more]
PSA6A_ARATH9.726e-2533.52Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA2_YEAST1.270e-2432.56Proteasome component Y7 OS=Saccharomyces cerevisia... [more]
PSMA_HALSA1.659e-2435.80Proteasome subunit alpha OS=Halobacterium salinari... [more]
PSMA_HALS31.659e-2435.80Proteasome subunit alpha OS=Halobacterium salinaru... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004287_A11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933311 ID=CK933311; Name=CK933311; organism=Citrus sinensis; type=EST; length=944bp
GGGGGAAAGAGGATCGAATTGACTCACAAATCGAAAAAGAAAGAAGAGAG
CAAGAATGAGCAGCATAGGCACAGGCTACGATCTGTCGGTGACCACATTC
TCTCCCGACGGTCGCGTTTTCCAGATCGAATACGCCGCCAAAGCCGTCGA
CAACAGCGGGACTGTGATTGGAATTAAATGCAAAGATGGCATCGTTATGG
GAGTGGAGAAGCTAATAGCGTCGAAGATGATGTTGCCTGGTTCCAATAGA
AGAATCCATTCCGTTCATCGTCACTCCGGCATGGCTGTTGCAGGATTAGC
AGCAGATGGGAGACAAATTGTTACCAGGGCCAAGTCTGAAGCTACAAACT
ATGAAAGTGTATATGGCGAACCAATTCCTGTTAAAGAACTTGCTCAACGA
GTTGCTAGCTATGTGCATCTATGTACTCTATATTGGTGGCTCAGACCTTT
TGGATGTGGTGTAATTCTTGGAGGTTATGACAGAGATGGACCGCAATTGT
ATATGATTGAACCTTCTGGTATCTCCTATAGGTATTTTGGAGCTGCAATT
GGAAAGGGCAGGCAGGCTGCTAAAACAGAGATTGAAAAGTTGAAGCTTTC
TGAAATGACCTGCCGACAAGGGGTCATTGAAGTAGCCAAGATCATTTATG
GAGTGCACGATGAGGCTAAGGACAAGGCCTTTGAACTGGAAATGAGCTGG
GTCTGTGATGAATCAAACCGCCAGCATCAGAAGGTACCAGATGAGCTTCT
TGAGGAAGCTAAGGCAGCCGCCAGAGCAGCGTTGGAAGAGATGGATGCAG
ATTAGTGTAGCAGAGTTGATAATATTTGGTTACTAGTTTGATGCCATTTC
AGGGCTTGTCTTGGAATACTTTTCGAAACATTTTCAAAATATTTANNNAG
ATTGGTGGATTCTCTTAAAAAAAAAAAAANNNAAANNNANAAAA
back to top